Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N09
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0407 + 17345382-17345579,17345711-17346235                       33   0.41 
07_01_0901 + 7578143-7578327,7578430-7578455,7578576-7578606,757...    29   6.7  

>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
 Frame = -1

Query: 374 LCKIPGVTVPALAPRP--XSDSWKW-----DLFGSPATLWRNKS 264
           LC++PG  V  L P P   +DSW+W     +L GSPA  +  K+
Sbjct: 190 LCRLPGPAVLPLPPLPSTPADSWQWRKCSSNLAGSPAPAYSYKT 233


>07_01_0901 +
           7578143-7578327,7578430-7578455,7578576-7578606,
           7578690-7578777,7578889-7579034,7579641-7579685,
           7579776-7579879,7579976-7580112,7580553-7580654,
           7581375-7581587
          Length = 358

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 374 LCKIPGVTVPALAPRPXSDSWKWDLFGSPATL 279
           L ++P    P L P+    SW W + GSP  L
Sbjct: 287 LREVPMEKRPELGPQSFPTSWSWQMQGSPLPL 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,425
Number of Sequences: 37544
Number of extensions: 264050
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)