Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N09
         (899 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC073998-1|AAH73998.1|  287|Homo sapiens ATAD1 protein protein.        56   2e-07
AL133327-1|CAI16701.1|  361|Homo sapiens ATPase family, AAA doma...    56   2e-07
AK075223-1|BAC11482.1|  361|Homo sapiens protein ( Homo sapiens ...    56   2e-07
BC063530-1|AAH63530.1|  330|Homo sapiens ATAD1 protein protein.        38   0.038
U79280-1|AAB50218.1|  135|Homo sapiens unknown protein.                32   2.5  

>BC073998-1|AAH73998.1|  287|Homo sapiens ATAD1 protein protein.
          Length = 287

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 38/54 (70%)
 Frame = +2

Query: 212 TRNEVFQMAIRVAFVSAVTYFSIKWLVNQIDPTSKSRXKAEERAREQLRQVSCR 373
           +RNEV  +  R+    AVTYF+IKW+V+ IDPT K + +A+++A + ++Q+  +
Sbjct: 12  SRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMKQIGVK 65


>AL133327-1|CAI16701.1|  361|Homo sapiens ATPase family, AAA domain
           containing 1 protein.
          Length = 361

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 38/54 (70%)
 Frame = +2

Query: 212 TRNEVFQMAIRVAFVSAVTYFSIKWLVNQIDPTSKSRXKAEERAREQLRQVSCR 373
           +RNEV  +  R+    AVTYF+IKW+V+ IDPT K + +A+++A + ++Q+  +
Sbjct: 12  SRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMKQIGVK 65


>AK075223-1|BAC11482.1|  361|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90742 fis, clone PLACE1011181, weakly similar to
           MSP1 PROTEIN HOMOLOG. ).
          Length = 361

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 38/54 (70%)
 Frame = +2

Query: 212 TRNEVFQMAIRVAFVSAVTYFSIKWLVNQIDPTSKSRXKAEERAREQLRQVSCR 373
           +RNEV  +  R+    AVTYF+IKW+V+ IDPT K + +A+++A + ++Q+  +
Sbjct: 12  SRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMKQIGVK 65


>BC063530-1|AAH63530.1|  330|Homo sapiens ATAD1 protein protein.
          Length = 330

 Score = 38.3 bits (85), Expect = 0.038
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = +2

Query: 272 FSIKWLVNQIDPTSKSRXKAEERAREQLRQVSCR 373
           F+IKW+V+ IDPT K + +A+++A + ++Q+  +
Sbjct: 1   FTIKWMVDAIDPTRKQKVEAQKQAEKLMKQIGVK 34


>U79280-1|AAB50218.1|  135|Homo sapiens unknown protein.
          Length = 135

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 365 IPGVTVPALAPRPXSDSWKWDLFGSPATLWRNKSLQTQM-RPL 240
           +P +  PA A    S++W    FG P +LW+ +   T+  RPL
Sbjct: 16  LPWLRSPATAWTLPSEAWPMGAFGEPLSLWQGRRTDTEAHRPL 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,131,371
Number of Sequences: 237096
Number of extensions: 1536630
Number of successful extensions: 2167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)