Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N09
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-3|CAC42312.1|  339|Caenorhabditis elegans Hypothetical pr...    36   0.030
Z69664-2|CAA93516.2|  342|Caenorhabditis elegans Hypothetical pr...    36   0.030
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    31   0.85 
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    28   7.9  

>Z69664-3|CAC42312.1|  339|Caenorhabditis elegans Hypothetical
           protein K04D7.2b protein.
          Length = 339

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 15/47 (31%), Positives = 30/47 (63%)
 Frame = +2

Query: 215 RNEVFQMAIRVAFVSAVTYFSIKWLVNQIDPTSKSRXKAEERAREQL 355
           RNE+  +AIRV   +AV++ S+++LV  +DP      +++++   +L
Sbjct: 4   RNELIGVAIRVVAAAAVSFLSVRYLVKYLDPNYSVNEESKKKLFHEL 50


>Z69664-2|CAA93516.2|  342|Caenorhabditis elegans Hypothetical
           protein K04D7.2a protein.
          Length = 342

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 14/50 (28%), Positives = 31/50 (62%)
 Frame = +2

Query: 215 RNEVFQMAIRVAFVSAVTYFSIKWLVNQIDPTSKSRXKAEERAREQLRQV 364
           RNE+  +AIRV   +AV++ S+++LV  +DP      +++++  +   ++
Sbjct: 4   RNELIGVAIRVVAAAAVSFLSVRYLVKYLDPNYSVNEESKKKVAQLFHEL 53


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 211 YSERSVPNGYKGRICVCSDLFLHKVA 288
           Y E++  NGY+  IC+C    LH V+
Sbjct: 120 YDEKTPGNGYRSLICICDTTLLHVVS 145


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +1

Query: 184 CRNDGGRLIYSERSV-----PNGYKGRIC-VCSD 267
           C NDG  +++++  V     PNGY GR C  CSD
Sbjct: 772 CPNDGPCILHADGDVICTECPNGYTGRRCDECSD 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,021
Number of Sequences: 27780
Number of extensions: 218550
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)