Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_N04
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.88
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 29 1.2
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 28 1.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 27 3.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.7
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 4.7
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 27 4.7
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 6.2
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 8.2
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 8.2
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.88
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Frame = +3
Query: 279 SLITNKKSSCGIYTGIHALFSKGDFRSI---------EGVPL-AKIPHDW-ADYEPDNAG 425
SL+ +SC I+TG F + SI + PL K+P DY P N
Sbjct: 11 SLVEETNASCVIHTGDFGFFERSSLPSISERTLRHIVQFSPLIKKLPRSKNFDYYPSNPI 70
Query: 426 GD-ENCILMYPDGNFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDSEYTLSK 578
GD +N I +PD +++ Q++ +KK S G+ + + L K
Sbjct: 71 GDLKNSIASHPDCLLSELP-----QFLSQEKKFSVPVYVVWGACEDVHVLEK 117
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 255 AALKSSMLSLITNKK---SSCGIYTGIHALFSKGDFRSIEGVPLA 380
++L SS SL+ KK SS + HAL +F + EGVPLA
Sbjct: 33 SSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEGVPLA 77
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +3
Query: 489 TFQYVCYKKKTSTVAMSSCGSVDSEYTLSKETGNCYKFHKVPRTWSRAYMTCLAEGGYLT 668
T++ V TV M + + E S E +K KVP W R + + + G T
Sbjct: 35 TYEGVKNANGNYTVTMIAGDGIGPEIAQSVE--RIFKAAKVPIEWERVKVYPILKNGTTT 92
Query: 669 IINSQQEATFLKELFAKNLPLIWSEDSGKISLSL 770
I + +E+ ++ K PL G +S++L
Sbjct: 93 IPDDAKESVRKNKVALKG-PLATPIGKGHVSMNL 125
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 440 TIFVTSSIIWFIIGPIMRNFCQWNSF 363
T+F SS+IW +IGP R F N++
Sbjct: 617 TVFFNSSVIWGVIGP-KRMFSGKNTY 641
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 685 KRLRSLRNFSRRTCLSYGRKILERYRFHWLT 777
+ L SLR + + C+S+ +K L+ ++F L+
Sbjct: 960 QELESLRRLNYKNCISFWKKYLKDFKFKSLS 990
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 402 DYEPDNAGGDENCILMYPDGNFADVNCTD 488
+Y PD+ N +L YPDG + + N D
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG-YTESNMPD 274
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 387 PHDWADYEPDNAGGDENCILMYPDGNFADVN 479
PH W DYE ++ +NC L + ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 746 FWKDIAFIGLHDWNEHGEWLTIN 814
FWK +A HDW + G + TI+
Sbjct: 440 FWKYVAVPNPHDWPQVGSYDTIS 462
>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 198 QEARLRCRLEGSVLASPLDAALKSSMLSLITNKKSSCGIYTGIHALFSKGDFR 356
+EA R + SV+ SPL+ LK L L+ N G +G ++ S DF+
Sbjct: 80 EEADEAPRTQLSVI-SPLEKKLKRDFLFLLLNSNRQPGKSSGKSSIPSPDDFK 131
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 351 SLLSRITHEYQCRCHTNSSYLLSKTACCF-LKQRPEVKPIQILPNDIL 211
SLLS + T+++ L+K A +KQRPEV I I+ ++L
Sbjct: 612 SLLSSSSASIADLSITSATEFLAKVATFLPIKQRPEVSKISIVDENLL 659
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,784
Number of Sequences: 5004
Number of extensions: 74845
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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