Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N04
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998...    35   0.100
01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240...    33   0.23 
10_08_0100 + 14788426-14789097                                         29   6.6  
04_03_0787 + 19635858-19635990,19636112-19636183,19637358-196373...    28   8.7  

>03_03_0040 -
           13999040-13999179,13999524-13999638,13999759-13999818,
           14000007-14000060,14000274-14000333,14000418-14000480,
           14000552-14000595,14000671-14000755,14000904-14001028,
           14001368-14001432,14001460-14001518,14001678-14001743,
           14001870-14001935,14002019-14002105,14002168-14002257,
           14002378-14002440,14003153-14003419
          Length = 502

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +2

Query: 131 MTIRTSVNINGWLKLQ*DSSYLARGSIKMSFGRICIGFTSG 253
           M I  ++ I GWL L     +LA+G I + FGRI +GF++G
Sbjct: 151 MRISATICIFGWLSL-----HLAKGVIMLYFGRILLGFSTG 186


>01_06_1680 -
           39123536-39123628,39123726-39123821,39123941-39124093,
           39124273-39124382,39124601-39124757,39124867-39124877,
           39125138-39125228,39125401-39125496,39125605-39125724,
           39125914-39125978,39126066-39126168,39126406-39126631,
           39126714-39126790
          Length = 465

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +3

Query: 357 SIEGVPLAKIPHDWADYEPDNAGGDENCILMYPDGNFADVNCTDTFQYVCYKKKTSTVAM 536
           SI G  L   P D+ D EPD      + I+     N  D  C    + +C++KK  TV  
Sbjct: 347 SIYGKQLMIDPQDFQDAEPDILANSASEIINRIKEN--DDQCAMALRSLCHRKKGLTVEE 404

Query: 537 SSCGSVDS 560
           +S  S+DS
Sbjct: 405 ASLISIDS 412


>10_08_0100 + 14788426-14789097
          Length = 223

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 PDNAGGDENCILMYPDGNFADVNCTDTFQY 500
           P  AGG E C+  YP+G  A     D  Q+
Sbjct: 53  PFTAGGHEWCVDFYPNGKLAAAGDADMIQF 82


>04_03_0787 +
           19635858-19635990,19636112-19636183,19637358-19637390,
           19637765-19637845,19637956-19638083
          Length = 148

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/45 (28%), Positives = 30/45 (66%)
 Frame = +3

Query: 636 MTCLAEGGYLTIINSQQEATFLKELFAKNLPLIWSEDSGKISLSL 770
           + C+A+  Y T+ +S+  AT++ E  AK++ L +++ +G+ S+ +
Sbjct: 57  VACIADLAYKTVGSSKLLATYITEQLAKDVEL-FAQHAGRKSIKM 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,089,223
Number of Sequences: 37544
Number of extensions: 459573
Number of successful extensions: 1087
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)