Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N01
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   4.5  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    26   5.9  

>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -1

Query: 667 ETFTVLRFXLIDWRGAEXLXNSMPSDPQXERIXLGLTLGNCQARSIPSKPYXSA 506
           + +++LR  ++ W   E + +++   P  E I +G+  G C      +  Y S+
Sbjct: 321 QLWSILRHKILHWTELEYVVSTICFYPDGESIVVGMFYGLCAIYETKNLQYVSS 374


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 457 WNRSKPVLLSLIPECCWLNXMVSMELTSPGSSQEL 561
           W R   + LSL+    W+N +VS  LT+P S   L
Sbjct: 270 WKRDHRLELSLLDNKRWVNILVS-HLTAPESHASL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,507
Number of Sequences: 5004
Number of extensions: 37865
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)