Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M24
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   8.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +1

Query: 670  PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPP 831
            PP      + P      +   P+  P    P  PPP  +P P P    G+P  P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP-PVPKPSVGVPPVP 1211



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
 Frame = +1

Query: 670  PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPP-XXSPXPDPCRXXGIPXP----PX 834
            PP  A     P          P+  P   PP   P     P P P     +P P    P 
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 835  XPLXXXXGPXXXXP 876
             P+     P    P
Sbjct: 1229 VPVPTAKAPPVPAP 1242


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +1

Query: 712  GXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXPLXXXXGPXXXXP 876
            G   P  P+  P   P    PP  S    P     +P PP  P     GP    P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPP 1732


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/102 (24%), Positives = 28/102 (27%), Gaps = 1/102 (0%)
 Frame = +1

Query: 520 GERYQLTQRR*YGYPQNQGIPQERTCEQKAXKRPXTVKRPRCWRFSIGLRPPXXASKKST 699
           GER   T +     P   G P   T      +       P       G  P      KS+
Sbjct: 60  GERKSNTPKSFAAPPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSS 119

Query: 700 PQXXGXETPXGPIXXPXRXPPXXPPPXXS-PXPDPCRXXGIP 822
                   P  P       PP   PP  S P P P     IP
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/56 (26%), Positives = 18/56 (32%)
 Frame = +1

Query: 673 PXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
           P  ++    P      T   P+  P   PP   PP   P   P    G P  P  P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMGAPAAPPLP 450


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 540 SKAVIRLSTESGDTXGKNM*AKGXQKA 620
           ++  IR  T +GD  G NM +KG + A
Sbjct: 794 TRLFIRFCTSTGDAMGMNMISKGVEHA 820


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/54 (27%), Positives = 15/54 (27%)
 Frame = +1

Query: 733 PIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXPLXXXXGPXXXXPXXXXXP 894
           PI  P   P    PP   P P        P PP  P     G     P     P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,883
Number of Sequences: 5004
Number of extensions: 33105
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)