Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_M24
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 34 0.12
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.21
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.21
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.48
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.48
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.48
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 31 1.1
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 31 1.1
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 31 1.1
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 31 1.1
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 31 1.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 1.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 4.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.5
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 5.9
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 29 5.9
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 5.9
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 5.9
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 29 5.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 5.9
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 29 5.9
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 5.9
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.8
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 7.8
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 842 RGXXGGXGIPXKRXGSGXGEXXGGGXXGGXR 750
+G G GIP K G G G GGG GG R
Sbjct: 802 KGRGGKRGIPKKTGGGGGGRGRGGGGRGGGR 832
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGI-PXPPXXPLX 846
PP +S Q P P PP P P +P P P G+ P PP P
Sbjct: 246 PPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPG 305
Query: 847 XXXGP 861
GP
Sbjct: 306 RTPGP 310
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 712 GXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
G P P P P PPP S P P G+ PP P
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Frame = +1
Query: 661 GLRPPXXASKKSTPQXXGXETPXGP-IXXPXRXPPXXPP------PXXSPXPDPCRXXGI 819
G+ PP S+ P G P P + P PP PP P P P P R
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP--- 371
Query: 820 PXPP 831
P PP
Sbjct: 372 PAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGI-PXPPXXPLX 846
PP +S Q P P PP P P +P P P G+ P PP P
Sbjct: 256 PPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPG 315
Query: 847 XXXGP 861
GP
Sbjct: 316 RTPGP 320
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 712 GXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
G P P P P PPP S P P G+ PP P
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Frame = +1
Query: 661 GLRPPXXASKKSTPQXXGXETPXGP-IXXPXRXPPXXPP------PXXSPXPDPCRXXGI 819
G+ PP S+ P G P P + P PP PP P P P P R
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP--- 381
Query: 820 PXPP 831
P PP
Sbjct: 382 PAPP 385
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXX----PPPXXSPXPDPCRXXGIPXPP 831
PP K +P G +P P PP PPP SP P P G P PP
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA--GGSPPPP 292
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP S P P P P PPP + P G P PP P
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +1
Query: 661 GLRPPXXASKKSTPQXXGXETPXGPIXXPXRXPPXX--PPPXXSPXPDPCRXXGIPXPP 831
G PP A P G P P P PP PPP P P P PP
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPP---PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXX----PPPXXSPXPDPCRXXGIPXPP 831
PP K +P G +P P PP PPP SP P P G P PP
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA--GGSPPPP 313
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP S P P P P PPP + P G P PP P
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +1
Query: 661 GLRPPXXASKKSTPQXXGXETPXGPIXXPXRXPPXX--PPPXXSPXPDPCRXXGIPXPP 831
G PP A P G P P P PP PPP P P P PP
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPP---PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXX----PPPXXSPXPDPCRXXGIPXPP 831
PP K +P G +P P PP PPP SP P P G P PP
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA--GGSPPPP 298
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP S P P P P PPP + P G P PP P
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +1
Query: 661 GLRPPXXASKKSTPQXXGXETPXGPIXXPXRXPPXX--PPPXXSPXPDPCRXXGIPXPP 831
G PP A P G P P P PP PPP P P P PP
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPP---PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +1
Query: 673 PXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXX-SPXPDPCRXXGIPXPPXXPLXX 849
P S + +P P P P P P P S P P G P PP P
Sbjct: 197 PVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRR 256
Query: 850 XXGP 861
GP
Sbjct: 257 PPGP 260
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 673 PXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPP-PXXSPXPDPCRXXGIPXPPXXPLXX 849
P P+ +P GP+ P PP P P P R G P PP
Sbjct: 212 PGPVDPSEDPKPSEPPSP-GPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPG 270
Query: 850 XXGPXXXXP 876
GP P
Sbjct: 271 PPGPPTRRP 279
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +1
Query: 664 LRPPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXP--PPXXSPXPDPCRXXGIPXPPXX 837
L P TP G P P R PP P P SP P P + P
Sbjct: 343 LAKPTPMQTPMTPSFRGTNAAQSPANAPPRPPPPRPAAPSVESPIPPPRTQQSMQATPGA 402
Query: 838 P 840
P
Sbjct: 403 P 403
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 712 GXETPXGPIXXPXRXPPXXPP-PXXSPXPD-PCRXXGIPXPPXXP 840
G P GP P P PP P SP PD P G PP P
Sbjct: 229 GPAGPPGPPGAPGNDGPPGPPGPKGSPGPDGPAGVDGQAGPPGPP 273
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +1
Query: 673 PXXASKKSTPQXXGXETPX-GPIXXPXRXPPXXPP-PXXSPXPDPCRXXGIPXPP 831
P K P G P GP P + P PP P +P PD G P PP
Sbjct: 233 PGRDGMKGAPGAAGRLIPVPGPQGAPGKPGPIGPPGPKGNPGPDGQSYQGPPGPP 287
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +1
Query: 673 PXXASKKSTPQXXGXETPX-GPIXXPXRXPPXXPP-PXXSPXPDPCRXXGIPXPP 831
P K P G P GP P + P PP P +P PD G P PP
Sbjct: 233 PGRDGMKGAPGARGRLIPVPGPQGAPGKPGPIGPPGPKGNPGPDGQSYQGPPGPP 287
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 712 GXETPXGPIXXPXRXPPXXPP-PXXSPXPD-PCRXXGIPXPPXXP 840
G P GP P P PP P SP PD P G PP P
Sbjct: 229 GPAGPPGPPGAPGNDGPPGPPGPKGSPGPDGPAGVDGQAGPPGPP 273
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Frame = +1
Query: 730 GPIXXPXRXPPXX-PPPXXSPXPDPCRXXGIPXPPXXPLXXXXGPXXXXP 876
GP P PP PPP P P C P PP P P P
Sbjct: 26 GPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCP 75
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +1
Query: 724 PXGPIXXPX--RXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
P PI P PP PPP P P C P P P
Sbjct: 46 PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXP-DPCRXXGIPXPPXXP 840
PP + P+ P P R PP PP SP P +P R P PP P
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP---SPEPRNPPRTPPSPIPPPPP 196
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP +KS P P P PP PPP P P P P P
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPP-RVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 724 PXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPP 831
P PI P PP PPP P P P I PP
Sbjct: 501 PLPPIATPSSVPPPPPPP---PPPPPALEQEISGPP 533
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 538 TQRR*YGYPQNQGIPQERTCEQKAXKRPXTVKRP 639
T RR Y YP + +P E ++ +RP T + P
Sbjct: 225 TTRRPYPYPSFEVLPHHEEYEPRSTRRPTTTEEP 258
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/75 (26%), Positives = 21/75 (28%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXPLXX 849
PP + P P P PP PPP P P G P PP P
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPP--PPPMMGGIPPPPPMFGAPPPPPPPSGL 123
Query: 850 XXGPXXXXPXXXXXP 894
P P P
Sbjct: 124 GVAPQPPRPKTPVNP 138
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -2
Query: 893 GXXXXXGXXXXGPXXXXRGXXGGXGIPXKRXGSGXGEXXGGGXXGGXRXG 744
G G G RG GG G R G G G GGG GG G
Sbjct: 77 GGGNWGGNGGGGNGGGGRGGGGGGG--GGRGGGGGGRGGGGGGGGGRGGG 124
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -2
Query: 839 GXXGGXGIPXKRXGSGXGEXXGGGXXGGXRXGXFIGPXG 723
G GG G G G G GGG GG R G G G
Sbjct: 92 GGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGG 130
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP P G G P P PPP P P P G P PP P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP P G G P P PPP P P P G P PP P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP P G G P P PPP P P P G P PP P
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGFKGGPPPPPPP 373
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 757 PPXXPPPXXSPXPDPCRXXGIPXPP 831
PP PPP P P P GIP PP
Sbjct: 770 PPPPPPPSAIPLP-PRLQGGIPPPP 793
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = -2
Query: 875 GXXXXGPXXXXRGXXGGXGIPXKRXGSGXGEXXGGGXXGGXRXGXF 738
G G + GG GIP + G G GGG GG F
Sbjct: 325 GGPVGGGGGGAKSGGGGGGIPGQSVYMGAGGGGGGGGGGGATSAYF 370
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP A P G G P R P P P PC G P PP P
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPC-PQGPPGPPGPP 159
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP A P G G P R P P P PC G P PP P
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPC-PQGPPGPPGPP 159
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +1
Query: 685 SKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXPLXXXXGP 861
S+ S +P P P PP PP +P P P G+ PP L P
Sbjct: 300 SRISLASTSASSSPSDPCPSPPLLPPVCPP---APPPPPPPIGGLTSPPKDALKNVPEP 355
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 760 PXXPPPXXSPXPDPCRXXGIPXPPXXPLXXXXGPXXXXP 876
P PPP P P P G P PP P GP P
Sbjct: 559 PIPPPP---PPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +1
Query: 685 SKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXPL 843
SK S+ + E P P P P P P P PDP + P P+
Sbjct: 666 SKPSSSEVPPAE-PSAPEPKPAPKPDPKPDPKPDPKPDPVPAKPVSPPVIVPI 717
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 757 PPXXPPPXXSPXPDPCRXXGIPXPP 831
PP PPP P P P GIP PP
Sbjct: 770 PPPPPPPSAIPLP-PRLQGGIPPPP 793
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXE-TPXGPIXXPXRXPPXXPPPXXSPXP 795
PP P E T PI P PP PPP P P
Sbjct: 328 PPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPP 370
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 670 PPXXASKKSTPQXXGXETPXGPIXXPXRXPPXXPPPXXSPXPDPCRXXGIPXPPXXP 840
PP A P G G P R P P P PC G P PP P
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPC-PQGPPGPPGPP 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,602
Number of Sequences: 27780
Number of extensions: 217373
Number of successful extensions: 1436
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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