Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M23
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    49   1e-06
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    48   2e-06
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    46   5e-06

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 30/95 (31%), Positives = 43/95 (45%)
 Frame = +3

Query: 177 PAAADVXXXLXSVGIEAXAEXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGGXXXXXXX 356
           P+A+D+   L +VGIEA +E ++ +  EL G  +  LIAAG   L+++P GG        
Sbjct: 18  PSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGA--ASAAP 75

Query: 357 XXXXXXXXEXXXXXXXXXXXXXSESDDXXGSGLFD 461
                                  ESD+  G GLFD
Sbjct: 76  AAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 42/95 (44%)
 Frame = +3

Query: 177 PAAADVXXXLXSVGIEAXAEXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGGXXXXXXX 356
           P+A+D+   L +VGIEA AE ++ +  EL G  +  LIAAG   LS++P  G        
Sbjct: 18  PSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAG 77

Query: 357 XXXXXXXXEXXXXXXXXXXXXXSESDDXXGSGLFD 461
                                  ESD+  G GLFD
Sbjct: 78  GAAGAEATS--AAEEAKEEEAAEESDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 29/95 (30%), Positives = 43/95 (45%)
 Frame = +3

Query: 177 PAAADVXXXLXSVGIEAXAEXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGGXXXXXXX 356
           P+A+D+   L +VGIE+ +E ++ +  EL G  +  LIAAG   L+++P GG        
Sbjct: 18  PSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGA--AAAAA 75

Query: 357 XXXXXXXXEXXXXXXXXXXXXXSESDDXXGSGLFD 461
                                  ESD+  G GLFD
Sbjct: 76  PAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,028
Number of Sequences: 5004
Number of extensions: 11110
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)