Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M22
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    28   2.0  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   6.2  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    26   6.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   8.2  

>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 263 IYTIHADINDNRIEKGVYEVDLNLN 337
           +YT+ A IND  + K + E D NLN
Sbjct: 117 MYTVSAKINDVEVVKVLLEPDFNLN 141


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 327 KSTSYTPFSIRLSLISACIVYILPSLFSALDITKAPT 217
           ++T     S +LS  S  I  + PSL S   +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -3

Query: 336 FRFKSTSYTPFSIRLSLISACIVYILPSLFSALDITKAPTTXSSVEYSSTLRCLKT 169
           F+ K  +     +  +L  AC + I  +  +  D+ K      S +Y S L C  T
Sbjct: 102 FKSKINASPDRPLASALAGACAITISDAFMTPFDVIKQRMQLPSRKYKSALHCATT 157


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 303 SIRLSLISACIVYILPSLFSALDITKAPTTXSSVEYSSTLRCLKTEPLST 154
           S+  +L S   VYI   +FSALD++ +     S  + STL   KT  L T
Sbjct: 716 SLARALYSNAEVYIFDDIFSALDVSTSRKIYESC-FLSTLLQHKTIILFT 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,712
Number of Sequences: 5004
Number of extensions: 43365
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)