Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M22
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           30   0.025
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 377 YDDDSTIYVASND-GIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAY 547
           ++ D  ++V SN   +Y+Y + D S   Y  FKA+V    K    D  Y V +    Y
Sbjct: 491 HEYDQNVWVLSNKLAMYLYGSIDSSKINYRIFKANVKEAVKDTXCDPNYVVPDSEHGY 548


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -3

Query: 267 YILPSLFSALDITKAPTTXSSVEYSSTLRCLKTEPLSTLEAVTLSPTTKMRRVAAFILDI 88
           +++P+    L I + P      E + +  CL  E L     VT   TTK      + +D+
Sbjct: 408 FMIPTHLKVLTIEEKPFVYVR-EIAFSESCLPEEILCPHFNVTDGETTKTFCCKGYCMDL 466

Query: 87  QFPLARTCNKT 55
              L++T N T
Sbjct: 467 LKELSKTINFT 477


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 116 LIFVVGLSVTASKVLNGSVFRQRSVELYS 202
           ++FVVGL   A +++    ++Q    LYS
Sbjct: 27  MVFVVGLERVAEELMGRRRWKQYQDTLYS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,142
Number of Sequences: 438
Number of extensions: 3063
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)