Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M20
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    32   0.092
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    30   0.49 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    29   0.86 
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    28   2.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.6  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.5  

>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 466 DISETEGS-WIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLG 609
           D ++T  S WIGS   L + A+   +G+  + +GRK  +   I  F LG
Sbjct: 126 DFNDTSSSSWIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLG 174


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 460 NFDISETEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLL 618
           ++  S      I  ++N+G+   CF     MD IG++ +++F  + + +G +L
Sbjct: 50  SYSYSSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIIL 102


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 499 SVINLGAAAICFPIGLXMDA-IGRKKTMLFLILPFTLGWLLITFGTXVXMLI 651
           +V N+ A++   PIG   D  + RK  ML  ++  T    L+TFG  V MLI
Sbjct: 65  AVANIAASS---PIGFLADKFLTRKVPMLIGLIFLTSATALLTFGNSVPMLI 113


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 463 FDISETEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLL 618
           +  S      I  ++N+G+   C      MD IG++ +++F  + + +G +L
Sbjct: 51  YSYSSARQGLITGMVNVGSMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIIL 102


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 231 TCSIFLCASETNTNGRMANLGVSQTELVGPRGDSGRKLPQ-YIAALXSYP 377
           TCS F+     NT      L   + E   P+G S +K+P+ +++ L   P
Sbjct: 230 TCSAFVFLHNKNTGLDKETLKAIENEFYHPQGVSTQKMPEVFVSGLVYSP 279


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 487 SWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLG 609
           SWIG+  +L   +I    G+  + +GRK  +   I+ F  G
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFG 168


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 487 SWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLG 609
           SWIG+   L   +I    G+  + +GRK  +   I+ F  G
Sbjct: 128 SWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFG 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,286
Number of Sequences: 5004
Number of extensions: 47611
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)