Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M20
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458...    40   0.002
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391...    39   0.006
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001...    38   0.010
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    37   0.024
07_03_1045 + 23528768-23528879,23528979-23530399                       33   0.39 
03_05_0852 - 28241454-28241762                                         29   6.4  

>05_07_0152 +
           28044733-28045032,28045131-28045220,28045770-28045829,
           28045912-28045977,28046161-28046226,28046330-28046405,
           28046721-28046785,28046879-28046971,28047302-28047322,
           28047600-28047692,28047939-28047998,28048157-28048222,
           28048314-28048373,28048498-28048612,28048738-28048850
          Length = 447

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +1

Query: 460 NFDISETEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLLITF 627
           + D++ +E S  GS+ N+GA       G   + IGRK +++   +P  +GWL I+F
Sbjct: 93  DLDLTLSEFSVFGSLSNVGAMVGAIASGQMAEYIGRKGSLMIAAIPNIIGWLAISF 148


>05_07_0151 +
           28038178-28038480,28038578-28038667,28039130-28039189,
           28039274-28039339,28039562-28039627,28039719-28039794,
           28039972-28040036,28040115-28040192,28040362-28040442,
           28040526-28040610,28040702-28040748,28040969-28041028,
           28041179-28041244,28041327-28041386,28041524-28041638,
           28041733-28041845
          Length = 476

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 469 ISETEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLLITFGTXVXML 648
           +S +E S  GS+ N+GA       G   + IGRK +++   +P  +GWL I+F      L
Sbjct: 97  LSISEFSAFGSLSNVGAMVGAIASGQMAEYIGRKGSLIIAAVPNIIGWLAISFAKDASFL 156


>05_07_0239 -
           28599452-28599564,28599685-28599799,28600051-28600116,
           28600270-28600329,28600571-28600617,28601118-28601202,
           28601554-28601646,28601727-28601791,28601942-28602017,
           28602110-28602175,28603082-28603141,28603400-28603489,
           28603594-28603893
          Length = 411

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 478 TEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLLITF 627
           +E S  GS+ N+GA       G   + IGRK +++   +P  +GWL I+F
Sbjct: 99  SEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISF 148


>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
            13987652-13987774,13987962-13988015,13988352-13988411,
            13988522-13988584,13988790-13988863,13989177-13989261,
            13989376-13989456,13989764-13989856,13990275-13990339,
            13990407-13990482,13990570-13990635,13991094-13991153,
            13991233-13991322,13991755-13991817,13992502-13992625,
            13993031-13993271,13993355-13993624,13993715-13994089,
            13994178-13994381,13994455-13995136,13995231-13995279,
            13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 460  NFDISETEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLLITF 627
            +F +S +E    GSV+ +GA       G   D++GRK TM    +   +GW  I F
Sbjct: 1019 DFGLSNSEYGVFGSVLTIGAMIGALTSGRLADSLGRKTTMGLAAIIGIVGWFTIYF 1074


>07_03_1045 + 23528768-23528879,23528979-23530399
          Length = 510

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 460 NFDISETEGSWIGSVINLGAAAICFPIGLXMDAIGRKKTMLFLILPFTLGWLLITFGTXV 639
           +F+IS+ +   +  ++NL +    F  G   D IGR+ T++F  + F  G  L+ F    
Sbjct: 52  DFNISDGKVEVLMGILNLYSLIGSFAAGRTSDWIGRRYTIVFAAVIFFAGAFLMGFAVNY 111

Query: 640 XMLI 651
            ML+
Sbjct: 112 AMLM 115


>03_05_0852 - 28241454-28241762
          Length = 102

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 277 GWPISVSLKQNWLVLGEILVASY 345
           GW  SVS  Q W VL E L  SY
Sbjct: 74  GWSHSVSAFQKWAVLAENLAGSY 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,469,504
Number of Sequences: 37544
Number of extensions: 307961
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)