Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M13
         (1194 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   7.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   7.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   7.9  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +2

Query: 464 PPPXPRXXAIS--PPXPPXPT 520
           P P PR   +S   P PP PT
Sbjct: 251 PTPKPRPTKVSRRKPRPPRPT 271


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 488 AISPPXPPXPTXPXSLRS 541
           A SPP PP P+   +L+S
Sbjct: 68  ANSPPSPPAPSELPALKS 85


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
 Frame = +1

Query: 1081 PXPSX-DPXPAR-------RXLPPXXLSPPLPXAPXXTPSXL 1182
            P PS  DP PA           PP    PPLP  P   P+ +
Sbjct: 153  PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMI 194


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,298
Number of Sequences: 336
Number of extensions: 1708
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34733218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)