Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M13
         (1194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
 Frame = +1

Query: 919  PHPPXXXPSFRSXXPPXX*XXPPXRXXISXPXPSASPHXLLXPRXXTXPFXXXXPXPSXD 1098
            P PP    +     PP     PP     S P     P  L   R  + P     P P+  
Sbjct: 340  PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP---PAPPPAI- 395

Query: 1099 PXPARRXLPP-----XXLSPPLPXAPXXTPS 1176
            P  +   LPP        +PP+P  P   PS
Sbjct: 396  PGRSAPALPPLGNASRTSTPPVPTPPSLPPS 426



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 5/139 (3%)
 Frame = +2

Query: 464 PPPXPRXXAISPPXPPXPTXPXSLRSSGHXTXXFXYAPXVPXXHXXSFSXXXXXXXXXXS 643
           PPP     +  P  PP P  P S+  + + T      P  P     + +           
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP--PSSRVSAAALAANKKRPPPP 314

Query: 644 XPXSAXSTPPPXIXSSSXS-----PAPPXXXDFIXXXPXXSPTTXSPSLXLXXSRXPPXX 808
            P S  +   P I + S +     P PP   +     P       +P      S      
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 809 LDPLTSXXXVXXSPXCPPP 865
             P  S      +P  PPP
Sbjct: 375 QPPPLSSSRAVSNPPAPPP 393



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/62 (27%), Positives = 19/62 (30%)
 Frame = +1

Query: 925  PPXXXPSFRSXXPPXX*XXPPXRXXISXPXPSASPHXLLXPRXXTXPFXXXXPXPSXDPX 1104
            PP   PS     PP      P    +    P A P     P     P     P P+  P 
Sbjct: 424  PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483

Query: 1105 PA 1110
            PA
Sbjct: 484  PA 485



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/70 (24%), Positives = 23/70 (32%)
 Frame = +2

Query: 653 SAXSTPPPXIXSSSXSPAPPXXXDFIXXXPXXSPTTXSPSLXLXXSRXPPXXLDPLTSXX 832
           SA + PP    S + +P  P         P   P +  PSL +     PP       +  
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458

Query: 833 XVXXSPXCPP 862
                P  PP
Sbjct: 459 LPAGMPAAPP 468



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = +1

Query: 919  PHPPXXXPSFRSXXPPXX*XXPPXRXXISXPXPSASPHXLLXPRXXTXPFXXXXPXPSXD 1098
            P PP   PS     PP      P     + P P ++P  +  P     P     P  +  
Sbjct: 418  PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPPLPPAAPA 475

Query: 1099 PXPARRXLP 1125
            P PA    P
Sbjct: 476  PPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 20/84 (23%), Positives = 26/84 (30%)
 Frame = +1

Query: 925  PPXXXPSFRSXXPPXX*XXPPXRXXISXPXPSASPHXLLXPRXXTXPFXXXXPXPSXDPX 1104
            PP   PS  +   P     PP         P  +P   + P           P PS  P 
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 1105 PARRXLPPXXLSPPLPXAPXXTPS 1176
              +  +    + PP    P  TPS
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 464 PPPXPRXXAISPPXPPXP 517
           PPP P   +ISP  PP P
Sbjct: 744 PPPPPVRSSISPSMPPAP 761


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 464 PPPXPRXXAISPPXPPXPTXPXSLRSS 544
           PPP P      PP PP P    S   S
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGS 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,475
Number of Sequences: 5004
Number of extensions: 20804
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)