Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M07
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.33 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
 Frame = +1

Query: 262 GGGGGGXXXGGGGGXXKKXKXXG-GGXXXXXXXXXGXXXFXXGXXGXGGGXXXXXXGXG- 435
           GGG GG   G GG         G GG         G   F  G  G  GG      G G 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 436 -GXXXXXXXXXXXGXXXGXGGXG 501
            G           G   G GG G
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHG 269



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 21/79 (26%), Positives = 21/79 (26%)
 Frame = +1

Query: 265 GGGGGXXXGGGGGXXKKXKXXGGGXXXXXXXXXGXXXFXXGXXGXGGGXXXXXXGXGGXX 444
           G  GG   G GGG        GG          G      G  G G G      G  G  
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243

Query: 445 XXXXXXXXXGXXXGXGGXG 501
                    G   G GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFG 262



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +1

Query: 265 GGGGGXXXGGGGGXXKKXKXXGGGXXXXXXXXXGXXXFXXGXXGXGG 405
           GGG G   GG GG        GGG         G   F  G  G GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGG---LGGFGGGPGGFGGGPGGHGG 270


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 492 PXPXXXPXXXXXXXXXXXXPPPXXXXXXXPPPPPXP 385
           P P   P            PPP       PPPPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 303 PPPXPXXXPPPPPP 262
           PPP P    PPPPP
Sbjct: 752 PPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 435 PPPXXXXXXXPPPPPXP 385
           PPP       PPPPP P
Sbjct: 766 PPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
 Frame = -1

Query: 399 PPPXPXXKXXXXXXXXXXXXXXPXXXFXFFXXPPPXPXXX---PPPPPP 262
           PPP P                 P         PPP P      PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 435 PPPXXXXXXXPPPPPXP 385
           PPP       PPPPP P
Sbjct: 14  PPPGFEPPSQPPPPPPP 30



 Score = 25.4 bits (53), Expect(2) = 2.2
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -1

Query: 303 PPPXPXXXPP--PPPP 262
           PPP P   PP  PPPP
Sbjct: 12  PPPPPGFEPPSQPPPP 27



 Score = 25.4 bits (53), Expect(2) = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = -1

Query: 303 PPPX---PXXXPPPPPPXF 256
           PPP    P   PPPPPP +
Sbjct: 14  PPPGFEPPSQPPPPPPPGY 32



 Score = 20.6 bits (41), Expect(2) = 2.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 405 PPPPPXP 385
           PPPPP P
Sbjct: 9   PPPPPPP 15



 Score = 20.6 bits (41), Expect(2) = 2.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 405 PPPPPXP 385
           PPPPP P
Sbjct: 10  PPPPPPP 16


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +1

Query: 265 GGGGGXXXGGGGGXXKKXKXXGGGXXXXXXXXXGXXXFXXGXXGXGGG 408
           GG GG   G GG    +    GGG         G      G  G  GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,229
Number of Sequences: 5004
Number of extensions: 9590
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)