Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_M04
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 64 3e-11
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 28 1.5
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 28 2.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 27 3.5
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 4.7
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 6.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 8.1
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 63.7 bits (148), Expect = 3e-11
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Frame = +3
Query: 234 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNXKVKIVRTYK---IEKRVVSKSI 398
WAD+ + G+ P + +N G K + E++ D++ KVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 399 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 563
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 564 SSNVIFKCRTCQRRPF 611
+ + +CR C+ F
Sbjct: 124 KGSSVVRCRACKGNHF 139
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 270 PPPSEVVENGLKIVTEYKYDNDNXKVKIVRTYKIEKRVVSKSIAK 404
PP ++VV+ K D+ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 2.0
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = +3
Query: 276 PSEVVENGLKIVTEYKYDNDNXKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 440
P E +E + +++++ + + + T + +R S AK+K +KF D S
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351
Query: 441 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 563
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 243 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNXKVKIVRTYKIEKRVVSKSI-AKRKTWS 419
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 420 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 539
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -1
Query: 448 GLSLAESPNLLQVLRLAILFETTRFSILYVLTIFTFXLSLSYLYSVTIFSPFSTTSEG-G 272
G++ E+PN + +R + R + YV+ +F L L Y I S S S+G
Sbjct: 261 GIAFGEAPNPEKTIRKSSFQSLFRIATFYVIGVFV--LGLCVPYDSDILS--SNASKGNA 316
Query: 271 GSTPWSISTSSAQ 233
++P+ ++ AQ
Sbjct: 317 AASPFVVAIKLAQ 329
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 243 EVEIDQGVLPPPSEVVENGLKIVTEYKY 326
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +3
Query: 456 NPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQRR 605
NP+ +A ++ ++ + S+ + + + + G + +S V+F CR C +R
Sbjct: 549 NPSYKRLAREIHIEKLPSELKLRNAEFRGIFG-ESEASTVLFVCRVCSKR 597
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 276 PSEVVENGLKIVTEYKYDNDNXKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 455
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 456 NPATTN 473
PA+T+
Sbjct: 104 APASTS 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,522
Number of Sequences: 5004
Number of extensions: 57993
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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