Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_M04
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 69 4e-12
02_05_1014 + 33510108-33510471,33510857-33511362 44 2e-04
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 31 0.92
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 30 2.1
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 30 2.1
12_01_0964 + 9685989-9686459 29 6.5
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737... 29 6.5
04_04_1575 + 34548774-34549109,34549979-34550185 28 8.6
04_03_0872 + 20452534-20453271 28 8.6
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 69.3 bits (162), Expect = 4e-12
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Frame = +3
Query: 234 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNXKVKIVRTYKIEKRV---V 386
W + E D+G +LPP S ENG K V EY++D+ KVK+ RT+++ K +
Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71
Query: 387 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPS 566
SKS +R++W KFGD+ + G + E V + +++ P D L S
Sbjct: 72 SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKS 130
Query: 567 SNVIFKCRTCQRR 605
V+ CRTC ++
Sbjct: 131 GAVLMVCRTCGKK 143
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 44.0 bits (99), Expect = 2e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Frame = +3
Query: 273 PPSEVV---ENGLKIVTEYKYDNDNXKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 434
PP V+ ENG+K EY+ + + V++ T ++ + V+K A+R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 435 A-SDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQRR 605
A +D G + E V + +S+ P LD + CR C +
Sbjct: 96 AHNDDAGARLTVVSPEEIVLERPSAPGSKSEDPLIPALD-----KGAALMVCRICNAK 148
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 31.5 bits (68), Expect = 0.92
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = -1
Query: 460 GLGPGL-SLAES-PNLLQVL----RLAILFETTRFSILYVLTIFTFXLSLSYLYSVTIFS 299
G GPG SL +S P +L VL L +L +TT+ + + T S Y + F
Sbjct: 97 GFGPGTTSLYQSHPWVLAVLPDGKALGVLADTTQRCEIDLREESTIKFSAPSAYPIVTFG 156
Query: 298 PFSTTSEGGGSTPWSISTSS 239
PF+T SE S +I T S
Sbjct: 157 PFNTPSEVMSSLSHAIGTVS 176
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 30.3 bits (65), Expect = 2.1
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = -1
Query: 454 GPGL-SLAES-PNLLQVL----RLAILFETTRFSILYVLTIFTFXLSLSYLYSVTIFSPF 293
GPG SL +S P +L VL L +L +TT + + T S S Y V +F PF
Sbjct: 153 GPGTTSLYQSHPWVLAVLPDGKALGVLADTTCRCEIDLRQESTMKFSASCTYPVILFGPF 212
Query: 292 STTSEGGGSTPWSISTSS 239
+T SE S +I T S
Sbjct: 213 NTPSEVTTSLSHAIGTVS 230
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 201 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNXKV-KIVRTYKIEK 377
D + E +A+WA Q VL P + LK D +V + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754
Query: 378 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 464
R + KS K T + F +S P NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783
>12_01_0964 + 9685989-9686459
Length = 156
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 273 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 136
VE+ QS Q R +++QQQ C+ + I Q C S +VI+ +
Sbjct: 58 VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105
>12_01_0805 -
7378364-7378435,7378534-7378616,7378843-7379020,
7379822-7379977,7380205-7380308,7381653-7381695,
7382142-7382234,7382391-7382686,7382795-7382942,
7383577-7383615
Length = 403
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 445 LSLAESPNLLQVLRLAILFETTRFSILYVLTIFTFXLSLSYLYSVTI 305
LSL+E PN L + L +++++ + +LY++ L + S I
Sbjct: 155 LSLSEDPNSLPCIALCLVYQSNKSPMLYLIQSLVHRLQIQVRPSAQI 201
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 201 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNXKVKIVRTYKI 371
D+PV +F A W + V+ +E E LKIV K D+D +++ YK+
Sbjct: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137
>04_03_0872 + 20452534-20453271
Length = 245
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 515 FLTGDELHEDIFSYISSSRVRP 450
F+ GDELHED F + SS P
Sbjct: 31 FVAGDELHEDDFLFSSSPAAPP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,830,184
Number of Sequences: 37544
Number of extensions: 367457
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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