Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   3.3  
U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   3.3  
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    29   5.8  

>Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical
           protein F22B5.2 protein.
          Length = 256

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 35/98 (35%), Positives = 51/98 (52%)
 Frame = +3

Query: 231 SWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNXKVKIVRTYKIEKRVVSKSIAKRK 410
           SWA+ VE D     P  +   +G +  T +  + D  + K+V  +K+  + V K +A RK
Sbjct: 9   SWAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKRVPKVVADRK 64

Query: 411 TWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQ 524
            W KFG    +  GP  ATT VAE+V MQF  ++   Q
Sbjct: 65  KWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQ 102


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 237 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNXKVKIVRTYKIEKRVVSKSIAKRKT 413
           AD   I +GV P   E+ + NGL  V E  Y+ND  K    +T   + +V   S  K K 
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380

Query: 414 WSKFGDSASD 443
             +  D  SD
Sbjct: 381 QEESDDEESD 390


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 354 VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 482
           +  YKI    +S  + KRKT  KFGD A D P      NP TT+  E
Sbjct: 6   ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 240 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNXKVKIVRTY-KIEKRVVSKSIAKRKTW 416
           D V+ID+ +    +E+V+   +IVT++    +  +V I+  Y K+ ++   K IA R+ W
Sbjct: 90  DLVDIDEIIPKTKTEIVDEKEQIVTDF----ERYRVLIINDYKKVSEKHYLKKIADREFW 145


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 102  PAKQVEHSIKPTYQLSLHTINCKIAIGV*NICFDMPVAEEFQ 227
            P ++ E S++PT + ++HT+     +     CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516


>U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical
           protein ZK813.4b protein.
          Length = 152

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -3

Query: 608 WSPLTCTTLKDNIAGXWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 441
           ++P    T+K NI   W++ ++  +   L L   GD  ++++DI   I+  R RP++V
Sbjct: 82  YTPDNHRTIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 137


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 102  PAKQVEHSIKPTYQLSLHTINCKIAIGV*NICFDMPVAEEFQ 227
            P ++ E S++PT + ++HT+     +     CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
            F29C12.3 protein.
          Length = 1631

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 101  SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 202
            +S+ S  +   YL+++ S+D    S+W I+YM R
Sbjct: 920  TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 EVVENGLKIVTEYKYDNDNXKVKIV 356
           + V+   K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 EVVENGLKIVTEYKYDNDNXKVKIV 356
           + V+   K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431


>U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK813.4a protein.
          Length = 171

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 587 TLKDNIAGXWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 441
           T+K NI   W++ ++  +   L L   GD  ++++DI   I+  R RP++V
Sbjct: 108 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 156


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
            protein F29C12.3 protein.
          Length = 1631

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 101  SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 202
            +S+ S  +   YL+++ S+D    S+W I+YM R
Sbjct: 920  TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,817
Number of Sequences: 27780
Number of extensions: 334883
Number of successful extensions: 1026
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)