Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M03
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    83   7e-17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.13 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.7  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    27   4.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.3  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 33/51 (64%), Positives = 41/51 (80%)
 Frame = +3

Query: 75  MSAHKTFIIKRXLAKKLKQNRPIPQWVRMRXGNTIRYNAKRRHWRRTKLKL 227
           M +HK+F  K+ LAK  +QNRPIPQW+R+R GNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
 Frame = +2

Query: 743 PPGXXPFXPXGPPKGPXTXXN---GPPLPXXFXXXXPXPPXXXXPXNSP 880
           PP   P  P G P  P    +    PPLP       P PP    P  +P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 209  SPVTPLSVISNSVSXAHPYPLRNGS 135
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 722  PXXXXXSPPGXXPFXPXGPPKGPXTXXNGPPLPXXFXXXXPXP 850
            P      PP   P  P GPP  P      PPLP       P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPP-----PPLPASSAPSVPNP 1746


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 197 PLSVISNSVSXAHPYPLRNGSVLFQLFGQXALNNKRLMGRHFEQSSCQKQS 45
           P  +I +S S  HP PL +G VL +   +   NNK  +   +   SC + S
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSCSQFS 158


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = -3

Query: 852 GGXGXXXXKXXGX-GGPXXXVXGP--FGGPXGXKGXXPGG 742
           GG G       G  GGP     GP  FGG  G  G  PGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,464
Number of Sequences: 5004
Number of extensions: 23162
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)