Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_M03
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 90 3e-18
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 90 3e-18
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 90 3e-18
07_01_0479 + 3606663-3607448 33 0.40
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 29 3.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.0
11_06_0478 + 24073295-24074172,24074790-24075090 29 6.6
01_01_0570 - 4231100-4232560 29 6.6
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 28 8.7
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 89.8 bits (213), Expect = 3e-18
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 75 MSAHKTFIIKRXLAKKLKQNRPIPQWVRMRXGNTIRYNAKRRHWRRTKL 221
M +HKTF IK+ LAKK++QNRPIP W+RMR NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 89.8 bits (213), Expect = 3e-18
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 75 MSAHKTFIIKRXLAKKLKQNRPIPQWVRMRXGNTIRYNAKRRHWRRTKL 221
M +HKTF IK+ LAKK++QNRPIP W+RMR NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 89.8 bits (213), Expect = 3e-18
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 75 MSAHKTFIIKRXLAKKLKQNRPIPQWVRMRXGNTIRYNAKRRHWRRTKL 221
M +HKTF IK+ LAKK++QNRPIP W+RMR NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>07_01_0479 + 3606663-3607448
Length = 261
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 743 PPGXXPFXPXGPPKGPXTXXNGPPLPXXFXXXXPXPPXXXXPXNSP 880
PPG P P GPP P GPP P P P P P
Sbjct: 190 PPGVPPAFPGGPPPPPGPFMRGPP-PMGPPQVRPGMPGGPPPGMRP 234
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 743 PPGXXPFXPXGPPKGPXTXXNGPPLPXXFXXXXPXPP 853
PPG P P PP+ P P +P F P PP
Sbjct: 170 PPGQMP-PPMRPPQMPIPFQRPPGVPPAFPGGPPPPP 205
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 743 PPGXXPFXPXGPPKGPXTXXNGPPLPXXFXXXXPXPPXXXXPXNSP 880
PP P P GPP G G P P P PP P +P
Sbjct: 217 PPQVRPGMPGGPPPG---MRPGMPPPPFRPGMPPPPPGPQQPGQNP 259
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 743 PPGXXPFXPXGPPKGPXTXXNGPPLPXXFXXXXPXPPXXXXPXN 874
PPG P P +GP + PP+ P PP P N
Sbjct: 240 PPGQGFNSPPPPGQGPVPPRDAPPMHHAQGNVPPPPPPNAGPPN 283
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Frame = +2
Query: 743 PPGXXPFXPXG--PPKGPXTXXNGPP--LPXXFXXXXPXPPXXXXPXNSP 880
PP P P G PP+ P PP P F P PP P + P
Sbjct: 19 PPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQP 68
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +2
Query: 722 PXXXXXSPPGXXPFXPXGPPKGPXTXXNGPPLPXXFXXXXPXPPXXXXPXNSP 880
P SPP P P PP P PPL P PP P P
Sbjct: 1147 PPLPSDSPPCQPPLPPSPPPATPPP---PPPLSPSLPPPPPPPPLPSGPPPQP 1196
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 58 QLDCSKCRPIRRLLLSANWPKS*NKTDPFLSG*GCAQETLF 180
QL C C + LSA WP K D F S G +E +F
Sbjct: 207 QLFCLMCWQVEYQYLSAEWPPPSYKIDAFSSRTGRWEERVF 247
>01_01_0570 - 4231100-4232560
Length = 486
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 879 GEFXGXXXXGGXGXXXXKXXGXGGPXXXVXGPFGGPXGXKGXXPGG 742
G F G GG G G GG G GG G G GG
Sbjct: 186 GRFGGGGMGGGGGFGGGAGGGVGGGGELGGGGMGGGSGFGGGAGGG 231
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +2
Query: 767 PXGPPKGPX-TXXNGPPLPXXFXXXXPXPPXXXXPXNSP 880
P PP P T G PLP P PP NSP
Sbjct: 456 PPAPPSPPICTTPPGSPLPQISPVRGPSPPPQQVAPNSP 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,290,288
Number of Sequences: 37544
Number of extensions: 201341
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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