Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_M03
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    89   3e-18
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    89   3e-18
AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    28   7.8  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +3

Query: 75  MSAHKTFIIKRXLAKKLKQNRPIPQWVRMRXGNTIRYNAKRRHWRRTKLKL 227
           MSA K   IKR LAKK KQNRP+PQWVRM+ GNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +3

Query: 75  MSAHKTFIIKRXLAKKLKQNRPIPQWVRMRXGNTIRYNAKRRHWRRTKLKL 227
           MSA K   IKR LAKK KQNRP+PQWVRM+ GNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -3

Query: 879 GEFXGXXXXGGXGXXXXKXXGXGGPXXXVXGPFGGPXGXKGXXPGGXXXXXXGXRXY 709
           GE  G    GG G       G  G      GP GG  G  G    G      G R Y
Sbjct: 259 GEGGGRGGRGGRGGFRGGFRGGRGGFGGPGGPMGGRGGMGGMGGRGRGGQAAGFRPY 315


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 224 LELXPSPVTPLSVISNSVSXAHPY--PLRNGSVLFQLFGQXALNNKR 90
           L++ P P++PLSV++N     +    PL  GS     FGQ AL + R
Sbjct: 4   LQVVPPPISPLSVLANHPDRPYEVLKPLGQGS-----FGQVALVSNR 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,292,717
Number of Sequences: 27780
Number of extensions: 165482
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)