Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L24
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0016 + 31042619-31042795,31043066-31043170                       56   3e-08
06_03_0395 - 20354713-20355570                                         31   1.7  
11_06_0326 - 22382001-22383248                                         29   3.9  
06_01_0873 - 6693397-6694038,6694231-6694370,6694713-6694930,669...    29   3.9  
09_04_0504 + 18180321-18181013                                         24   6.4  
06_03_0078 + 16291254-16291532,16291654-16291725                       29   6.7  
07_01_0466 - 3518315-3521428                                           24   7.2  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    28   8.9  

>03_06_0016 + 31042619-31042795,31043066-31043170
          Length = 93

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 231 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTA-VFCSSIS 407
           DPR+    R+Y PP       +DL  DY   L +VF + G+M+R K C+W A +FC+   
Sbjct: 19  DPRQPSTARQYTPP---KLSPQDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSL 75

Query: 408 FANSRVSDDTKQIVSSFM 461
                  +D KQ+  +FM
Sbjct: 76  VNMKNFENDLKQLSMAFM 93


>06_03_0395 - 20354713-20355570
          Length = 285

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 243 ADRERRYKPPPPTSAPAE 296
           ADR RR +PPPPT+ P E
Sbjct: 119 ADRGRRRQPPPPTAPPLE 136


>11_06_0326 - 22382001-22383248
          Length = 415

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 219 QLSADPRRADRERRYKPPPPTSAPA 293
           QL+ADP R  + R   PPPP  APA
Sbjct: 252 QLAADPARKSKPR--APPPPPPAPA 274


>06_01_0873 -
           6693397-6694038,6694231-6694370,6694713-6694930,
           6695040-6695133,6695247-6695483,6696192-6696260,
           6696513-6696636
          Length = 507

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 282 SAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVS 428
           SA     TT YM + G+V      +  L   AW +V  + +SF+ S ++
Sbjct: 189 SADCSVFTTSYMVVFGVVQVFFSQLQSLHEVAWLSVLAAVMSFSYSAIA 237


>09_04_0504 + 18180321-18181013
          Length = 230

 Score = 24.2 bits (50), Expect(2) = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +3

Query: 234 PRRA--DRERRYKPPPPTSAPA 293
           P+R+   + RR  PPPP   PA
Sbjct: 119 PKRSKNSKRRRVSPPPPQPVPA 140



 Score = 23.0 bits (47), Expect(2) = 6.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 267 PPPPTSAPAEDL 302
           PPPPT+A A D+
Sbjct: 141 PPPPTTADAADV 152


>06_03_0078 + 16291254-16291532,16291654-16291725
          Length = 116

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 159 LIRRVTATNI---CGPIIKSGKMQLSADPRRADRERRYKPPPPT 281
           L+RR   T+    CGPI +   + LS+      R   + PPPP+
Sbjct: 18  LLRRFAYTSYSSSCGPIRRHAAVALSSTTTTTTRFAAWSPPPPS 61


>07_01_0466 - 3518315-3521428
          Length = 1037

 Score = 24.2 bits (50), Expect(2) = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 195 PIIKSGKMQLSADPRRADRERRYKPPPPTSAP 290
           P++ S  +  SA+    + +    PPPPT  P
Sbjct: 218 PVMASEAVAASAEAAPEEEQILTPPPPPTPTP 249



 Score = 22.6 bits (46), Expect(2) = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 267 PPPPTSAPAEDLTTDYMNILGMVF 338
           PPPP  AP E    D ++ +  +F
Sbjct: 263 PPPPPEAPVERSKHDLVDKMPYLF 286


>02_01_0509 +
           3694689-3695683,3695799-3695946,3696864-3696943,
           3697214-3698062,3698193-3698337,3698426-3698677,
           3698780-3699089,3699415-3699524
          Length = 962

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 222 LSADPRRADRERRYKPPPPTSAPAED 299
           L+A PRRA   R   PPP   AP E+
Sbjct: 33  LAAAPRRARSGRHASPPPQRVAPEEE 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,630
Number of Sequences: 37544
Number of extensions: 305222
Number of successful extensions: 1357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)