Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L24
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...   154   1e-37
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score =  154 bits (373), Expect = 1e-37
 Identities = 71/110 (64%), Positives = 86/110 (78%), Gaps = 4/110 (3%)
 Frame = +3

Query: 216 MQLSADPRRADRERRYKPPPPTS----APAEDLTTDYMNILGMVFSMCGLMMRLKWCAWT 383
           MQ + DPRR +R  RYKP   T+    A +ED   +YMN+LGM+FSMCGLM+R+KWC+W 
Sbjct: 1   MQQNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWL 60

Query: 384 AVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPWAAL 533
           A+ CS ISFAN+R SDD KQIVSSFMLS+SAVVMSYLQNP+P+ PPW  L
Sbjct: 61  ALVCSCISFANTRTSDDAKQIVSSFMLSVSAVVMSYLQNPSPIIPPWVTL 110


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 231  DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFS 341
            D  R   ER   PPPPT   A+D  T   N+ G+ F+
Sbjct: 1111 DTVRQPTERDAPPPPPTQTKAQDEVT---NLPGLTFT 1144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,442
Number of Sequences: 27780
Number of extensions: 282717
Number of successful extensions: 982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)