Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L23
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   143   4e-35
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   143   4e-35
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.41 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.96 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   5.1  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   8.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  143 bits (346), Expect = 4e-35
 Identities = 63/89 (70%), Positives = 68/89 (76%)
 Frame = +1

Query: 229 LPFVFXAPIRPDXXNDVHVXMSKNSRQXYXXSXEAGXQTSAESWGXGRAVXRIPRVRGGG 408
           LPFVF APIRPD    VH  ++KN RQ Y  S +AG QTSAESWG GRA+ RIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 409 TXRSGQGAFGNMCRGGRMFXPTKPWRRWH 495
           T RSGQ AFGNMCR GRMF PTK WR+WH
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWH 112


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  143 bits (346), Expect = 4e-35
 Identities = 63/89 (70%), Positives = 68/89 (76%)
 Frame = +1

Query: 229 LPFVFXAPIRPDXXNDVHVXMSKNSRQXYXXSXEAGXQTSAESWGXGRAVXRIPRVRGGG 408
           LPFVF APIRPD    VH  ++KN RQ Y  S +AG QTSAESWG GRA+ RIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 409 TXRSGQGAFGNMCRGGRMFXPTKPWRRWH 495
           T RSGQ AFGNMCR GRMF PTK WR+WH
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWH 112


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +3

Query: 765 PXSPXVXGPPPXSXTNXSXVXTXRPSRXPXPRXXTLPXPLPPXXPPXHXXPPPXPPXXAX 944
           P  P +  P P S           PS  P P     P   PP  P      PP PP    
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203

Query: 945 P 947
           P
Sbjct: 204 P 204



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +2

Query: 791 PPXXXNQRXXGXXSPPXPXTXPPXXDPXXPLTPXRXPPXXRXXXPPXXXRXP 946
           PP   ++      +PP P   PP      P+ P + PP      PP     P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPI-PSKAPPIPSSLPPPAQPAAP 180


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +3

Query: 789 PPPXSXTNXSXVXTXRPSRXPXPRXXTLPXPLPPXXPPXHXXPPPXPPXXA 941
           PPP +    +      P   P P     P P PP        PPP PP  A
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
 Frame = +3

Query: 765 PXSPXVXGPPPXSXTNXSXVXTXRPSRXPXPRXXTLPXPLP------PXXPPXHXXPPPX 926
           P S     PP    +    +    P+  P P    +  PLP      P  PP    PPP 
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479

Query: 927 P-PXXAXP 947
           P P  A P
Sbjct: 480 PAPAPAAP 487



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = +3

Query: 789 PPPXSXTNXSXVXTXRPSRXPXPRXXTLPXPLPPXXPPXHXXPPPXPP 932
           PP  + +  S      P   P     +LP   PP  P      PP PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = +3

Query: 837 PSRXPXPRXXTLPXPLPPXXPPXH----XXPPPXPPXXAXP 947
           PS  P  R  +L  P PP  PP        PP  PP    P
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = +3

Query: 756 PXRPXSPXVXGPPPXSXTNXSXVXTXRPSRXPXPRXXTLPXPLPPXXPPXHXXPPPXPPX 935
           P  P S    G PP    N S   +  P   P         PLPP        PPP PP 
Sbjct: 313 PPPPPSRRNRGKPPIG--NGSSNSSLPPPPPPPRSNAAGSIPLPPQG---RSAPPPPPPR 367

Query: 936 XA 941
            A
Sbjct: 368 SA 369


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/65 (29%), Positives = 24/65 (36%)
 Frame = +3

Query: 753  APXRPXSPXVXGPPPXSXTNXSXVXTXRPSRXPXPRXXTLPXPLPPXXPPXHXXPPPXPP 932
            AP  P  P V  PP  + +    V     +  P P   +    +PP   P    PP  PP
Sbjct: 1139 APPVP-KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS---GIPPVPKPAAGVPPVPPP 1194

Query: 933  XXAXP 947
              A P
Sbjct: 1195 SEAPP 1199



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
 Frame = +3

Query: 765  PXSPXVXGPPPXSXTNXSXVXTXRPSRX----PXPRXXTLPXP----LPPXXPPXHXXPP 920
            P  P   G PP    + +      PS      P P     P P     PP   P    PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 921  PXPPXXAXP 947
              PP  A P
Sbjct: 1210 VPPPSTAPP 1218


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 849  PXPRXXTLPXPLPPXXPPXHXXPPPXPP 932
            P P    +  P PP  PP    PP  PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 855  PRXXTLPXPLPPXXPPXHXXPPPXPPXXAXP 947
            P   T P P  P     H  PPP  P  A P
Sbjct: 1359 PAVPTSPKPQIPDSSNVHAPPPPVQPMNAMP 1389


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 873 PXPLPPXXPPXHXXPPPXPP 932
           P P PP   P    PPP PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -2

Query: 931 GGXGGGXXXXGGXXGGK---GXGRVXXRGXGXRXGR 833
           GG GG     GG  GG+   G GR   RG G    R
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR 44


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 849  PXPRXXTLPXPLPPXXPPXHXXPPPXPPXXA 941
            P P    LP   PP   P    PP  PP  A
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGA 1913


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 946 GXAXXGGXGGGXXXXGGXXGGKGXGRVXXRGXGXR 842
           G    GG  G      G  GG+G GR+  RG   R
Sbjct: 108 GPRIGGGHHGPLHGPHGGFGGRGGGRMGGRGGRGR 142


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
 Frame = +3

Query: 753 APXRPXSPXVXGPPPXSXTNXSXVXTXRPSRXPXPRXXTLP-XPLPPXXPPXHXXP-PPX 926
           AP  P +P V  PP             RP+    P   ++P  P  P  P     P PP 
Sbjct: 520 APVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPV 579

Query: 927 PP 932
            P
Sbjct: 580 AP 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,833
Number of Sequences: 5004
Number of extensions: 34037
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)