Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L22
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567...    30   2.1  
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    30   2.8  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    30   2.8  
07_01_0563 + 4178176-4178295,4178391-4178834                           29   4.9  
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    29   4.9  

>07_03_1395 -
           26255776-26256043,26256194-26256414,26256550-26256786,
           26257476-26257776,26258027-26258106
          Length = 368

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 473 SCRLVLVFAGLVYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQLVNEPQXNSSPX*K 652
           S RL+L  AGL Y    + T  ++ + + I VA    + +  YA++ ++E + +      
Sbjct: 280 SGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERSEGTC-- 337

Query: 653 PDQGRVIHRSS 685
           P+   + H S+
Sbjct: 338 PEPAGIAHGST 348


>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 506 VYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQ 610
           VY+ +  R P+ +LH +++++   F  +Y+  ARQ
Sbjct: 402 VYMLVKYRLPLEILHLVNLLLCGLFSRLYSNLARQ 436


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 173 KLEVDDNVL*GIGLVILTKFGMF*IRTDSYDVWRREWLPRYCKNL-KGFPXRXSV 12
           +L++ DN+      +IL KF    +++DSY        P Y K L K FP + SV
Sbjct: 375 RLKLSDNIFCDEDQLILNKFNWMILKSDSYFAPALFMTPMYEKELEKMFPQKESV 429


>07_01_0563 + 4178176-4178295,4178391-4178834
          Length = 187

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 390 AAFITVIRSTTSVPLMRGVSEDCRAGKVL 304
           AA  TV+ + + VPL+RG S + R+G V+
Sbjct: 126 AATATVLSAASLVPLLRGESAEARSGGVM 154


>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
 Frame = +1

Query: 97  RIQNIPNFVKMTK-------PIPYNTLSS---TSSLGKKYCHCFQLRICC 216
           +I+N PN V + K       PIP +        S   KKYC CFQ  I C
Sbjct: 161 KIENSPNTVTVRKDNSEAIPPIPKHNKGCHCRKSECLKKYCECFQANILC 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,872,415
Number of Sequences: 37544
Number of extensions: 385149
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)