Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L21
         (853 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.42 
UniRef50_A6LVS2 Cluster: Restriction endonuclease; n=1; Clostrid...    33   9.1  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.42
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 526 MIRYIDEFGQTTTRMQ 573
           MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364


>UniRef50_A6LVS2 Cluster: Restriction endonuclease; n=1; Clostridium
           beijerinckii NCIMB 8052|Rep: Restriction endonuclease -
           Clostridium beijerinckii NCIMB 8052
          Length = 586

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +3

Query: 102 VKKYVPSTPEFEKTIGRYKEFVTNLDDPNSEPIRVFDPLSQSMLEEL 242
           ++K +  T E+E+ IG++KE +   +D  SE I+  D  + S ++EL
Sbjct: 194 IEKNIKLTTEYEENIGKFKEKIAEWNDKKSEYIKEQDE-NNSKIDEL 239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,100,019
Number of Sequences: 1657284
Number of extensions: 8064937
Number of successful extensions: 19975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19973
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75013275813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)