Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L21
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100976-1|AAI00977.1|  416|Homo sapiens RHBDL3 protein protein.       32   3.0  
BC100975-1|AAI00976.1|  404|Homo sapiens rhomboid, veinlet-like ...    32   3.0  
AJ313480-1|CAC86145.1|  404|Homo sapiens ventrhoid transmembrane...    32   3.0  

>BC100976-1|AAI00977.1|  416|Homo sapiens RHBDL3 protein protein.
          Length = 416

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 137 KDHWKIQRVRYQPGRS*FGAHTCFRSSVAEYAGRARPHQR 256
           +DHWK+   ++ PG + + +   FRS +  ++ +  PH+R
Sbjct: 36  EDHWKVLFDQFDPGNTGYISTGKFRSLLESHSSKLDPHKR 75


>BC100975-1|AAI00976.1|  404|Homo sapiens rhomboid, veinlet-like 3
           (Drosophila) protein.
          Length = 404

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 137 KDHWKIQRVRYQPGRS*FGAHTCFRSSVAEYAGRARPHQR 256
           +DHWK+   ++ PG + + +   FRS +  ++ +  PH+R
Sbjct: 36  EDHWKVLFDQFDPGNTGYISTGKFRSLLESHSSKLDPHKR 75


>AJ313480-1|CAC86145.1|  404|Homo sapiens ventrhoid transmembrane
           protein protein.
          Length = 404

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 137 KDHWKIQRVRYQPGRS*FGAHTCFRSSVAEYAGRARPHQR 256
           +DHWK+   ++ PG + + +   FRS +  ++ +  PH+R
Sbjct: 36  EDHWKVLFDQFDPGNTGYISTGKFRSLLESHSSKLDPHKR 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,687,554
Number of Sequences: 237096
Number of extensions: 1221318
Number of successful extensions: 2223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)