Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L21
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    29   5.5  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    29   5.5  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    29   5.5  

>U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical
           protein C35D10.7b protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +3

Query: 84  AIRMSKVKKYVPSTPEFEKTIGRYKEFVTNLDDPNSEPIRVFDPLSQSMLEE 239
           AI M    K VPS  +  K    +  F   L   N EP++VF+ L Q MLE+
Sbjct: 371 AISMIPKVKDVPSVVQLAKECKMWSAFERILKQYNFEPLKVFEEL-QKMLEK 421


>U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical
           protein C35D10.7a protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +3

Query: 84  AIRMSKVKKYVPSTPEFEKTIGRYKEFVTNLDDPNSEPIRVFDPLSQSMLEE 239
           AI M    K VPS  +  K    +  F   L   N EP++VF+ L Q MLE+
Sbjct: 422 AISMIPKVKDVPSVVQLAKECKMWSAFERILKQYNFEPLKVFEEL-QKMLEK 472


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 662 IAFILCFRFRGRCGXVFSALM 724
           I FI+C  F G  G +FS LM
Sbjct: 225 IPFIICMEFMGNSGRIFSGLM 245


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 662 IAFILCFRFRGRCGXVFSALM 724
           I FI+C  F G  G +FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 106 KSTCRQRLNSKRPLEDTKSSLPTWTILIRSPYVFSILCRRVCWKSSPSSEMSVNT 270
           ++ C +      PLED  + LP +++   +P  F  LC ++   SS +   + +T
Sbjct: 43  ENNCEKGAGGALPLEDRSNILPHFSVPFANPQQFLSLCAQLGNSSSRNVSSTAST 97


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 106 KSTCRQRLNSKRPLEDTKSSLPTWTILIRSPYVFSILCRRVCWKSSPSSEMSVNT 270
           ++ C +      PLED  + LP +++   +P  F  LC ++   SS +   + +T
Sbjct: 14  ENNCEKGAGGALPLEDRSNILPHFSVPFANPQQFLSLCAQLGNSSSRNVSSTAST 68


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 106 KSTCRQRLNSKRPLEDTKSSLPTWTILIRSPYVFSILCRRVCWKSSPSSEMSVNT 270
           ++ C +      PLED  + LP +++   +P  F  LC ++   SS +   + +T
Sbjct: 43  ENNCEKGAGGALPLEDRSNILPHFSVPFANPQQFLSLCAQLGNSSSRNVSSTAST 97


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 662 IAFILCFRFRGRCGXVFSALM 724
           I FI+C  F G  G +FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,225
Number of Sequences: 27780
Number of extensions: 202881
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)