Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L20
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.38 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.88 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   0.88 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.88 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 251 QIFRAFGDSGLVFTNDDTHIQLLRQYXISAWCK 153
           ++F+ +G + L F  D      +R + ISA CK
Sbjct: 104 KLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 225 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVK 371
           A+A   +   +K+ EVIK+ +K L+EN K    D     +  D K  VK
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDSLANKYDPDKKYRVK 118


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 225 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP-IQFRVI 401
           A+A   +   +K+ EVIK+ +K L+EN          +LW      +   Y P  +FRV 
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVENKP--------ELW----DSLANKYDPDKKFRVK 118

Query: 402 FTEQTVKL 425
           F E+  KL
Sbjct: 119 FEEEAKKL 126


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 225 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVK 371
           A+A   +   +K+ EVIK+ +K L+EN K    D     +  D K  VK
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDSLANKYDPDKKYRVK 118


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 345 TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 488
           T + K+I K   P + ++I     V ++   DH    L+D   +  IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 444  HALKLIDQQNHNKIAFGDSKDKTSKK--VSWKVYPRVGKQQSLL 569
            H +  ID   H       S D  + K  + WK++P  G+++S L
Sbjct: 990  HFISGIDSNLHVYAPLKISLDVNTPKGNMQWKIWPMKGEEKSRL 1033


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 133 ATHGEDEGKQRQAQTW 86
           A +G++  K+RQ Q W
Sbjct: 31  AVYGDEALKERQCQNW 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,292
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)