Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L12
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.89 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.6  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.8  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.8  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   6.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   8.3  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   8.3  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 534 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 644
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 437 VHKLNRVFGEDKSELNWETIPDDV 366
           +H +     EDKS+L +ETIPD V
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPV 32


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 519 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 635
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 382 VSQLSSDLSSPKTRLSLCTSATV 450
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +1

Query: 196 YNSVVVADYDSAVEKXXHLYEEXXXEVITNVVNKLIRNNK--MNCMEYAYQLWLQGLQGT 369
           +N      Y + +     +Y+    EVI  V+ +L  N +      E  YQ +++GL   
Sbjct: 71  FNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINEQDLETLYEKVYQSFVEGLDAN 130

Query: 370 SSGIVSQLSSDLSSPKTRLSL 432
            +GI +  +    S K  +SL
Sbjct: 131 DNGISAYPAGLKPSFKAAMSL 151


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 764 FDTVEDXLSPRVTAW 808
           FDT+ D  +P VTAW
Sbjct: 286 FDTIPDNYNPNVTAW 300


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 ITNVVNKLIRNNKMNCMEYAYQLWLQGL 360
           +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 40  LTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 575 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIXAQRQSETVA 441
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,194
Number of Sequences: 5004
Number of extensions: 48226
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)