Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L11
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    28   2.0  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    27   4.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    27   4.7  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   6.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   6.2  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 QPETFTCDSXGEPKVTLSSDLNSALEK 655
           +P+TF CDS  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 97  RSHFDVP*SLMRN*HRTQILR 35
           R  FD+  SL RN H+T+ILR
Sbjct: 63  RKRFDLQDSLSRNSHKTRILR 83


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 638 NSALEKDSGTNSLDPDTEPLKTLRP 712
           N ALE+   T SLD D +PL+ L P
Sbjct: 259 NPALERVETTASLDMDYKPLEPLAP 283


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -1

Query: 468 DCLVNSITXSPTICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTPASFG-AI 292
           + L N +   P +  S    SSTVL   + W + I  F   +    L  + T A+FG AI
Sbjct: 351 ELLFNPMELFPQVINSCSPSSSTVLCETTFWVTAIVLFTSAL----LGLLLTSATFGAAI 406

Query: 291 TSNDVTTSGSIG 256
            +  +  S +IG
Sbjct: 407 PTGIIVPSLAIG 418


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +2

Query: 530 YNLKNDDNGVXHFEVQPETFTCDSXGEPKVTLSSDLNSALEKDSGTNSLDPDTEPLKTLR 709
           Y  K+  + V    +   +FT  S     +T SS  +S   +DS T    P T    TL+
Sbjct: 254 YETKSSTSSVPTQTIDSSSFT--SSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQ 311

Query: 710 PAAICKIAXS 739
           P     I  S
Sbjct: 312 PTTSSPITTS 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,151
Number of Sequences: 5004
Number of extensions: 63599
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)