Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L11
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0263 - 13605195-13607366,13607535-13607702                       29   3.8  
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    29   6.6  
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209...    28   8.7  
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    28   8.7  
04_04_1420 + 33441260-33443704                                         28   8.7  
04_04_1419 - 33433463-33436009                                         28   8.7  

>04_03_0263 - 13605195-13607366,13607535-13607702
          Length = 779

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 29/91 (31%), Positives = 38/91 (41%)
 Frame = +2

Query: 515 AVRYGYNLKNDDNGVXHFEVQPETFTCDSXGEPKVTLSSDLNSALEKDSGTNSLDPDTEP 694
           A RYG   +ND NG        E F+  S    KV  +S   SA  K   T S DP  + 
Sbjct: 357 AFRYG---QNDSNGECRSVT--EVFSLQSIQPEKVNYNS---SAYLKVQITPSSDPTQKK 408

Query: 695 LKTLRPAAICKIAXSCYINVVHXSELRPKSY 787
           LKT+  A +  I     + +V     R + Y
Sbjct: 409 LKTILGATLAAITTLVLVVIVAIYVRRRRKY 439


>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -3

Query: 265  IDRPYVVLWXPFTGFLQKLLCRTAKALHV---TKFAGF*KSISIGSHVSSKHKNQEYFQR 95
            ID  +V +W  F G+L  LL  TAKA  +    +   F  SI +    + + K      R
Sbjct: 1197 IDTEWVYMWDKFGGYLLLLLGLTAKAEQIQDEVRLRLFLDSIGLSDLSAKEIKKWMPEDR 1256

Query: 94   SHFDV 80
             HF++
Sbjct: 1257 RHFEL 1261


>11_01_0283 -
           2095291-2095566,2095962-2096348,2096523-2096881,
           2097275-2097398,2097480-2097548,2098536-2098584,
           2099185-2099299,2099823-2099872,2099969-2100106,
           2101136-2101197,2102066-2102180,2103433-2103664,
           2103748-2103826,2103925-2103993,2104079-2104171,
           2104577-2104622,2105223-2105268,2105354-2105411,
           2105577-2105615,2105712-2105783,2105930-2106021,
           2106824-2106923
          Length = 889

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 527 GYNLKNDDNGVXHFEVQPETFTCDSXGEPKVTLSSDLNSALEKDSGTNSL-DPDTEPLKT 703
           GY             +Q     CD   +P +T    L +  +KD G  S+   D E LK 
Sbjct: 690 GYQYGEQQMAYPEQYMQQSAQDCDVLADPNITQDPRLMTQADKDRGLGSVFKRDDERLKQ 749

Query: 704 LR 709
           LR
Sbjct: 750 LR 751


>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +2

Query: 437 GDXVIELTKQS---KSFTGLYTADTNVIGAVRYGYNLKNDDNGVXHFEVQPETFTCDSXG 607
           G    +L KQ    +    +YTA+  ++ AV + +     DNG+ H +++PE    D+ G
Sbjct: 203 GHLFFQLYKQGLFREELARIYTAE--IVSAVAHLH-----DNGIMHRDLKPENILLDADG 255

Query: 608 EPKVTLSSDLNSALEKDSGTNS 673
              +T   D   A E +  T S
Sbjct: 256 HAMLT---DFGLAKEFNENTRS 274


>04_04_1420 + 33441260-33443704
          Length = 814

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 557 VXHFEVQPETFTCDSXGEPKVTLSSDLNSALEKDSGTN 670
           + H +V+PE    D   EPKVT    L   L +D+G++
Sbjct: 643 IVHCDVKPENILLDGDFEPKVT-DFGLVKLLSRDAGSH 679


>04_04_1419 - 33433463-33436009
          Length = 848

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 557 VXHFEVQPETFTCDSXGEPKVTLSSDLNSALEKDSGTN 670
           + H +V+PE    D   EPKVT    L   L +D+G++
Sbjct: 637 IVHCDVKPENILLDGDFEPKVT-DFGLVKLLSRDAGSH 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,933,246
Number of Sequences: 37544
Number of extensions: 396714
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)