Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L10
         (1179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   2.1  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    30   3.7  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = -1

Query: 228 PLXSPXPXXXXXPXXXTXXXXXXXPXXXPPPXPPPXXXXXPXP 100
           P+ +P P     P           P   PPP PPP     P P
Sbjct: 36  PMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = -1

Query: 228 PLXSPXPXXXXXPXXXTXXXXXXXPXXXPPPXPPPXXXXXPXP 100
           P+  P P     P           P   PPP PPP     P P
Sbjct: 44  PMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.303    0.147    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,443
Number of Sequences: 27780
Number of extensions: 58510
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)