Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L06
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   7.6  
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    22   7.6  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    22   7.6  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    22   7.6  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    22   7.6  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 204 LPPSHASNVQTAVTSTQALQPNXHNSNK 287
           LPP+ ++  +T +T+    +P+   +NK
Sbjct: 161 LPPTTSTTTRTTLTTKFTTKPSTKPTNK 188


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 6   KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 6   KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 82  KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 113



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 158 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 189



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 234 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 265



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 310 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 341



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 386 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 417



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 462 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 493



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 538 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 569



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 614 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 645


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 6   KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 674 RPVTGVXLNCGPADTDKIEQVKGVTYXLEGIP 769
           + +TG  +      +D IE VK      EGIP
Sbjct: 54  KTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,089
Number of Sequences: 336
Number of extensions: 3215
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)