Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L06
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    69   7e-13
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    47   4e-06
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    30   0.39 
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   6.4  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
 Frame = +2

Query: 314 KRNG*ISARYSLEWMPLGSVMYVGWCYIRASIDYEVSKVEIK----FYEM--FPFRVTSR 475
           KR G I   Y L  + L  +    W   R    Y+   V+++    FY +   P R  SR
Sbjct: 28  KRVGIIRLAYGLTGIGLVGLAGFAWAQDRHEKTYQKKGVQVEGPWQFYVLTTLPLRTLSR 87

Query: 476 LWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDXSSHRPEILQKLISVLHQAAQGMARDTY 655
            WG +   EIP+ +R   +G Y ++F  NL +         + L     +  +  AR   
Sbjct: 88  WWGYVNRIEIPLWMRVPAFGLYSKIFGCNLTEADPDDVRQYKNLAEFFTRKLKPGARVID 147

Query: 656 QQRPAYRPVTGVXLNCGPADTDKIEQVKGVTYXLEGIPRVKKMXKKEXMXAIXXP 820
              P   P  G  LN G  +  ++EQVKG+TY L+ +   +K+ + +   AI  P
Sbjct: 148 PDAPIVIPADGKILNYGVIEGGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSP 202


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 27/112 (24%), Positives = 47/112 (41%)
 Frame = +2

Query: 431 EIKFYEMFPFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDXSSHRPEILQKLI 610
           ++      P R  SR+WG+     +P  LR+  +  Y  +F  NL++         +   
Sbjct: 75  QVYLLSSLPLRSLSRVWGQFNRAHLPTFLRTPGFKLYAWVFGCNLSELKDPDLTHYRNFQ 134

Query: 611 SVLHQAAQGMARDTYQQRPAYRPVTGVXLNCGPADTDKIEQVKGVTYXLEGI 766
               +  +   R      P   PV G  +  G  D ++I+ VKG++Y LE +
Sbjct: 135 DFFCRELRPETRPVDPVSPVVSPVDGRIVCQGVVDNNRIQHVKGLSYSLEAL 186


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 464 VTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLND 571
           V+ RL G M+    P++L +F YG Y+R  S    D
Sbjct: 300 VSMRLTGYMSLIVPPIALGAFFYGEYVRKLSRTTQD 335


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 512 SLRSFVYGTYIRMFSVNL---NDXSSHRPEILQKLISVLHQAAQGMARDTYQ 658
           +++SF   T + M + NL   +  SS  PEI   +  + H +  G+ARD Y+
Sbjct: 87  AVQSFKPDTDVLMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLGLARDLYR 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,436
Number of Sequences: 5004
Number of extensions: 52817
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)