Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L06
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-3|AAK18866.2|  348|Caenorhabditis elegans Hypothetical pr...    56   5e-08
U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical pr...    56   5e-08
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    30   2.0  

>U00031-3|AAK18866.2|  348|Caenorhabditis elegans Hypothetical
           protein B0361.5a protein.
          Length = 348

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
 Frame = +2

Query: 344 SLEWMPLGSVMYVGWCYI---RASID--YEVSKVEIKFYEMFPFRVTSRLWGKMAACEIP 508
           S+  + +G   YVG+ +    R  +D  +  S  +I+ Y   PF   SR+ G +A  EIP
Sbjct: 35  SVSTLIIGGASYVGYLFTPDWREIVDSKHYYSNWKIRVYLSLPFNTASRVIGGLANQEIP 94

Query: 509 VSLRSFVYGTYIRMFSVNLNDXSSHRPEILQKLISVLHQAAQGMARDTYQQRPAYRPVTG 688
           V LR  + G + RM+   ++D      +      +  ++  +   R      P   P  G
Sbjct: 95  VWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFNRKLKESTR-PISASPLVSPADG 153

Query: 689 VXLNCGPADTDKIEQVKGVTYXLE 760
             L+ G  + +KIE VKG  Y ++
Sbjct: 154 TVLHFGKVEDNKIEYVKGHDYDVD 177


>U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical
           protein B0361.5b protein.
          Length = 377

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
 Frame = +2

Query: 344 SLEWMPLGSVMYVGWCYI---RASID--YEVSKVEIKFYEMFPFRVTSRLWGKMAACEIP 508
           S+  + +G   YVG+ +    R  +D  +  S  +I+ Y   PF   SR+ G +A  EIP
Sbjct: 64  SVSTLIIGGASYVGYLFTPDWREIVDSKHYYSNWKIRVYLSLPFNTASRVIGGLANQEIP 123

Query: 509 VSLRSFVYGTYIRMFSVNLNDXSSHRPEILQKLISVLHQAAQGMARDTYQQRPAYRPVTG 688
           V LR  + G + RM+   ++D      +      +  ++  +   R      P   P  G
Sbjct: 124 VWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFNRKLKESTR-PISASPLVSPADG 182

Query: 689 VXLNCGPADTDKIEQVKGVTYXLE 760
             L+ G  + +KIE VKG  Y ++
Sbjct: 183 TVLHFGKVEDNKIEYVKGHDYDVD 206


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 445 RNVPLPGD-QSIVGENGGLRNPGVPPQLR 528
           R  P PG  Q   GE+GG  NPG P Q+R
Sbjct: 179 RGPPGPGGPQGEAGEDGGAGNPGTPGQVR 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,442
Number of Sequences: 27780
Number of extensions: 323493
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)