Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L06
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.1  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 518  GGTPGFRRPPFSPTIDWSP 462
            GG P   RP   PT+D SP
Sbjct: 1361 GGRPVPERPERVPTVDLSP 1379


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 607  YQRSSPGRSGDGARYISAAPCVSPCDGSXLELW 705
            + R+ PG+S   A   SAAP  +  D     L+
Sbjct: 1034 FLRAKPGKSSGAAAMASAAPMPACFDSDRERLY 1066


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 528 TKLRRDTGISQAAIFPHNRLVTRKGNI 448
           T++RRD G+  +  F     + R+G++
Sbjct: 109 TQIRRDRGLHVSCSFSAGSTIIREGDV 135


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 629 AQGMARDTYQQRPAYRPVT 685
           +QG  R + QQ+  YRP T
Sbjct: 38  SQGFFRRSIQQKIQYRPCT 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,630
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)