Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L05
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    32   0.70 
08_02_1178 + 24958623-24959894                                         30   2.8  
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.8  
09_02_0239 + 6154758-6155039                                           29   4.9  
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    29   6.5  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 246  PRAPSTADHPILPSKIDDVKLDPNRRYVRSVTNPENNEASIESSHHT 386
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>08_02_1178 + 24958623-24959894
          Length = 423

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 488 RRKRWKRQFLSRVPKPQVPCVTVALDRP 405
           RR RW+   LSR+  P +PC+  + + P
Sbjct: 53  RRARWELSVLSRLAHPHLPCLLGSAETP 80


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 IPRAPSTADHPILPSKIDDVKLDPNRRYVRS 335
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>09_02_0239 + 6154758-6155039
          Length = 93

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 248 SCAEYCRPSDSSFENRRCEARSKQKVCSQCYQS 346
           SCA  CRP+  S   + C     Q  CSQC  S
Sbjct: 41  SCASSCRPAPISACGKACSLAGPQ-ACSQCQYS 72


>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 134 PAVXPADLQATTDTAPDNTYSAXSWPGTAMAVSRXQYSSCAE----YCRPSDSSFENRRC 301
           P V P D   +     D+ YS+ + P  + +  R +   CAE    Y  P +     R+ 
Sbjct: 28  PMVPPEDSSDSDVADEDDEYSSPNDPCPSPSPKRRKMGDCAEGDKDYIPPKEGETAPRQS 87

Query: 302 EARSKQKVCSQ 334
           + + K+KV S+
Sbjct: 88  KRQPKKKVPSK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,665
Number of Sequences: 37544
Number of extensions: 393672
Number of successful extensions: 1134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)