Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L05
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    28   7.7  
AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily a...    28   7.7  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   7.7  

>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +2

Query: 134 PAVXPADLQATTDTAPDNTYSAXSWPGTAMAVSRXQYSSCAEYCRPS 274
           PA  P  +Q TT T    T  +   P         Q   C E C+P+
Sbjct: 436 PACEPQCIQETTTTTTTTTTQSPQKPPIIKITVTGQQVGCVEQCQPA 482


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 240 NIPRAPSTADHPILPSKIDDVKLDPNRRYVRSVTNPENNEASIESSHHTVDIG 398
           N+  +PS   HP  PS    +     RR  RS  +PE+ E+  ESS  T++ G
Sbjct: 91  NLDMSPSRR-HPGRPSSSATISNSARRRRYRSCNSPEHLES--ESSQLTLESG 140


>AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 328 FAVLPIQKITRHPLNLPIIQLILDLTGRSRATVTQGTCGFGTLERNC 468
           F +LP+Q++TR+PL L  I   +  T     T T        + R+C
Sbjct: 311 FLMLPMQRVTRYPLLLYAILDRITTTDDRYKTATDALTSSNRVVRDC 357


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 328 FAVLPIQKITRHPLNLPIIQLILDLTGRSRATVTQGTCGFGTLERNC 468
           F +LP+Q++TR+PL L  I   +  T     T T        + R+C
Sbjct: 799 FLMLPMQRVTRYPLLLYAILDRITTTDDRYKTATDALTSSNRVVRDC 845


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,512
Number of Sequences: 27780
Number of extensions: 367049
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)