Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L04
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.30 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.69 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   1.2  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   6.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 503 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 679
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST  + P  P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 680 SNTTGT 697
             +T +
Sbjct: 361 PTSTSS 366



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 503 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 679
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST  + P  P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414

Query: 680 SNTTGT 697
             ++ T
Sbjct: 415 PTSSST 420



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 509 PKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 685
           P T  +     S P P   T+  TS S PP  NST + +T  V   + SST   P  P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321

Query: 686 TTGT 697
           T+ T
Sbjct: 322 TSST 325



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 503 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 679
           +TP   P   S  S+P P   T+   + S P  T ST  + +  +     S+T + P  P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306

Query: 680 SNTTGT 697
             +T +
Sbjct: 307 PTSTSS 312



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 503 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 679
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +    SS++  P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249

Query: 680 S 682
           +
Sbjct: 250 T 250



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 494 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAP 670
           L++ TP T P   S  S    W  TT  T  S    T+ST   +T      T  ++  + 
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657

Query: 671 LTPSNTTGT 697
            T S++T T
Sbjct: 658 STSSSSTAT 666


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 585 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 484
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 717 FVHGGLKVPVVFEGVSGAITVDDTVIT 637
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 637 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 771
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 433 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 525
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,452
Number of Sequences: 5004
Number of extensions: 63236
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)