Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L04
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    36   0.030
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   8.1  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   8.1  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +2

Query: 500 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 679
           +VT  T        ++P    TT   S + PP  ++T + +T+      V ST IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 680 SNTT 691
            +TT
Sbjct: 467 PSTT 470


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 509 PKTKPARKSPGSLPPCWKTTE--FTSRSCPPRTNST*SSITRKVLVMTVSSTVIA 667
           PKT+P    P ++P CW+     F     PPR N+T   I  K       + V+A
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNTMPLIEDKCYAKLGDTLVMA 472


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 295 VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQTVKLINKRDHHALKL 468
           VK ++   K+N +D     WT+   E +KSY  F  + R  FTE   K  N+++ + + L
Sbjct: 202 VKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE-LQKRWNRKNEYIISL 260

Query: 469 I 471
           I
Sbjct: 261 I 261


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 563 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 691
           TTE  S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 560 KTTEFTSRSCP-PRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGT 697
           KTT FT+   P P T ST +S T  V   + S+T     TP   T T
Sbjct: 434 KTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTST 480


>Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical
           protein T11G6.4 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 547 TPVL-ENNRVYFKIMSTEDKQYLKLDNTKGS-SDDRIIYGDSTADTFKHH 690
           TPVL +  R   K+ + EDK  L  D+   S S+D ++  D T    KHH
Sbjct: 444 TPVLIKEKRKRHKLKAREDKALLNSDSDSNSDSEDDLLLNDQTTRR-KHH 492


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = +1

Query: 406  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 561
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 562  NNRVYFKIMSTEDK 603
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = +1

Query: 406  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 561
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 562  NNRVYFKIMSTEDK 603
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,880
Number of Sequences: 27780
Number of extensions: 362522
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)