Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_L02
         (859 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P04142 Cluster: Cecropin-B precursor; n=16; Obtectomera...    80   8e-14
UniRef50_P01507 Cluster: Cecropin-A precursor; n=17; Ditrysia|Re...    62   1e-08
UniRef50_A6BMG0 Cluster: Cecropin A; n=1; Plutella xylostella|Re...    50   1e-04
UniRef50_Q2WGL2 Cluster: Antibacterial peptide; n=4; Obtectomera...    43   0.011
UniRef50_P01511 Cluster: Cecropin-D; n=6; Obtectomera|Rep: Cecro...    42   0.026
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    33   9.2  

>UniRef50_P04142 Cluster: Cecropin-B precursor; n=16;
           Obtectomera|Rep: Cecropin-B precursor - Bombyx mori
           (Silk moth)
          Length = 63

 Score = 79.8 bits (188), Expect = 8e-14
 Identities = 37/40 (92%), Positives = 37/40 (92%)
 Frame = +2

Query: 200 PEPRWKXFKXIEKMGRXIRDGIVKAGPAIEVLGSAKAIGK 319
           PEPRWK FK IEKMGR IRDGIVKAGPAIEVLGSAKAIGK
Sbjct: 24  PEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVLGSAKAIGK 63


>UniRef50_P01507 Cluster: Cecropin-A precursor; n=17; Ditrysia|Rep:
           Cecropin-A precursor - Hyalophora cecropia (Cecropia
           moth)
          Length = 64

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +2

Query: 200 PEPRWKXFKXIEKMGRXIRDGIVKAGPAIEVLGSAKAIGK 319
           PEP+WK FK IEK+G+ IRDGI+KAGPA+ V+G A  I K
Sbjct: 24  PEPKWKLFKKIEKVGQNIRDGIIKAGPAVAVVGQATQIAK 63


>UniRef50_A6BMG0 Cluster: Cecropin A; n=1; Plutella xylostella|Rep:
           Cecropin A - Plutella xylostella (Diamondback moth)
          Length = 66

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = +2

Query: 206 PRWKXFKXIEKMGRXIRDGIVK-AGPAIEVLGSAKAIGK 319
           PRWK FK +EK+GR IR+GI++  GPA+ V+G A +I +
Sbjct: 24  PRWKPFKKLEKVGRNIRNGIIRYNGPAVAVIGQATSIAR 62


>UniRef50_Q2WGL2 Cluster: Antibacterial peptide; n=4;
           Obtectomera|Rep: Antibacterial peptide - Bombyx mori
           (Silk moth)
          Length = 66

 Score = 42.7 bits (96), Expect = 0.011
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +2

Query: 212 WKXFKXIEKMGRXIRDGIVKAGPAIEVLGSAKAI 313
           W  FK +E +G+ +RD I+ AGPAI+VL  AK +
Sbjct: 23  WDFFKELEGVGQRVRDSIISAGPAIDVLQKAKGL 56


>UniRef50_P01511 Cluster: Cecropin-D; n=6; Obtectomera|Rep:
           Cecropin-D - Antheraea pernyi (Chinese oak silk moth)
          Length = 36

 Score = 41.5 bits (93), Expect = 0.026
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 212 WKXFKXIEKMGRXIRDGIVKAGPAIEVLGSAKAIGK 319
           W  FK +E+ G+ +RD I+ AGPA+  +  A A+ K
Sbjct: 1   WNPFKELERAGQRVRDAIISAGPAVATVAQATALAK 36


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 604 DPXMIXYIDXFGQTTTXM 657
           DP MI YID FGQTTT M
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,313,951
Number of Sequences: 1657284
Number of extensions: 5675845
Number of successful extensions: 7268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7267
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)