Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_K23
(1049 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.022
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 33 0.067
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.12
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.15
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.20
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 5.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.022
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXP-PXPXAPRXP----PXPRXAPPPXAXXXPPAP 546
PP P P P P P P P P P P P PP A PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 34.3 bits (75), Expect = 0.029
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPP 519
P P P P P P PP P P P PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +3
Query: 870 PPPXXXPPXP---PXPXPPXPPRXGAPXPP 950
PPP P P P P PP P G P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 30.3 bits (65), Expect = 0.47
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +1
Query: 409 GXXPPPXPXP--XXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXP 537
G PPP P P P P PP P A AP P A P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPA 543
P P P P P P P P PP A PP PPA
Sbjct: 746 PAPIPVP---PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 534 PPRXAXXXPPPPPXPP 581
PP A PPPPP PP
Sbjct: 767 PPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 870 PPPXXXPPXPPXPXPPXPPRXGAPXPP 950
PPP PP P PP P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 870 PPPXXXPPXPPXPXPPXPPRXGAPXPP 950
PP PP P PP G P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 534 PPRXAXXXPPPPPXPP 581
PP PPPPP PP
Sbjct: 753 PPAPIMGGPPPPPPPP 768
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 33.1 bits (72), Expect = 0.067
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 949 GGXGAPXRGGXGGXGXGGXGGXXXGG 872
GG G RGG GG GG GG GG
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGG 177
Score = 30.3 bits (65), Expect = 0.47
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -2
Query: 1036 RXAXAGAGXXXXXXXXXXXXXXXXXARAXGGXGAPXRGGXGGXGXGGXGGXXXGG 872
R AG G + GG G RGG GG GG G GG
Sbjct: 131 RNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 518 GGGAXRGXGGXRGAXGXGGXGXGXXXXGXGXGG 420
GGG+ G GG G G GG G G G GG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
PP P P PP P P PP P A PP PP P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIP--PPSPASA-PPIPSKAPPIP 168
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 430 PXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAPXXXXXXXXXXXXXXXXXXPPP 609
P P P P P + PP P PPP P PPP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Query: 610 P 612
P
Sbjct: 205 P 205
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAP---PPXAXXXPPA 543
PPP P P PP P + PP AP PP A P A
Sbjct: 150 PPPSPASAPPIPSKAPPIP-SSLPPPAQPAAPVKSPPSAPSLPSA 193
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPA 543
PP P P P P A PP P PPP P A
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSA--VPPMPPKVPPPPLSQAPVA 212
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 891 PXPPXPXPPXPPRXGAPXPP 950
P PP P P P AP PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Score = 26.6 bits (56), Expect = 5.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAP-RXPPXPRXAP---PPXAXXXPPAP 546
P P P P P P AP + PP P PP PP P
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.12
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAP--PPXAXXXPPAP 546
PP P P P P AP P AP PP A PPAP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAP-----PP-----XAXXXPPAP 546
PPP P P PP + PP PR AP PP A PPAP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Score = 29.5 bits (63), Expect = 0.83
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPX-APRXPPXPRXAPPPXAXXXPPAPXXXXXXXXXXXXXXXXX 597
PP P P P P P AP P A PP P AP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 598 XPPP 609
PPP
Sbjct: 475 APPP 478
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
PP P P P AP PP APPP P AP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAA-PAPPPAPAPAPAAP 487
Score = 27.9 bits (59), Expect = 2.5
Identities = 20/90 (22%), Positives = 21/90 (23%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAPXXXXXXXXXXXXXXXXX 597
PPP P P P P P P A + P P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 598 XPPPPXXXXXXXXXXXXXXXXXXXXPXPPP 687
PPPP P PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Frame = +3
Query: 870 PPPXXXPPXPPXPX-----PPXPPRXGAPXPPXARA 962
P P P PP P PP PP AP P A A
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.15
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPP-PXAXXXPPAP 546
PP P P P P PP AP P PP P PP P
Sbjct: 1179 PPVPKPAAGVP-PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
PP P P P P P P PP P + PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
PP P P P P P P P P P PP P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 30.3 bits (65), Expect = 0.47
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPP-PXAXXXPPAP 546
PP P P P P P AP P APP P PP P
Sbjct: 1102 PPVPKPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 30.3 bits (65), Expect = 0.47
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Frame = +1
Query: 421 PPXPXPXXXXPXP-----XPPXPXAPRXPPXPR---XAPP-PXAXXXPPAP 546
PP P P P P PP P PP P+ APP P PP P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 29.9 bits (64), Expect = 0.62
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPP---PXAXXXP-PAP 546
PP P P P P PP AP P PP P A P PAP
Sbjct: 1198 PPVPKPSVGVP-PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAPXXXXXXXXXXXXXXXXXX 600
PP P P P P P P P P + PP P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 601 PPPP 612
PPP
Sbjct: 1191 VPPP 1194
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAP--PPXAXXXPPAP 546
PP P P P P P PP P AP P + PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPPVPKPSVGVPPVP 1211
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +1
Query: 430 PXPXXXXPXPXPPXPXAPRXP-PXPRXAPP-PXAXXXPPAP 546
P P P P P A P P P APP P PP P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPP-PXAXXXPPAP 546
PP P P P P P P PP P PP P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +3
Query: 870 PPPXXXPPXPPXPX--PPXPPRXGAPXPPXARA 962
PPP PP P PP PP AP P A
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAP-PPXAXXXPPAP 546
P P P PP P PP P+ + P A PAP
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAP--PPXAXXXPPAP 546
PP P P P P P A P P AP P + PP P
Sbjct: 1092 PPVPKPSVAAP-PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
Score = 26.2 bits (55), Expect = 7.7
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Frame = +1
Query: 418 PPPXPXPXXXXPX-----PXPPXPXAPRXPPXPRX---APP--PXAXXXPPAP 546
PPP P P P PP P PP P+ APP + PP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPA 543
PP P P P P P P P + P P P+
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 424 PXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPP 519
P P P P PP P AP P P APPP
Sbjct: 1705 PTPPPP---PMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 424 PXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPA 543
P P PP AP PP P PPP + PA
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPA 1725
Score = 29.5 bits (63), Expect = 0.83
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 870 PPPXXXPPXPPXPXPPXPPRXGAPXPP 950
PPP PP P P P P AP PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGP-PSAPPPP 1734
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
P P P P PP P P P P + PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPP 516
PPP P P P P + PP P + P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +3
Query: 870 PPPXXXPPXP--PXPXPPXP-PRXGAPXPP 950
PPP PP P P PP P P AP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 873 PPXXXPPXPPXPXPPXPPRXGAPXPP 950
PP P PP P PP AP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPX-PPXPXAP-RXPPXPRXAPPPXAXXXP 537
P P P P P P PP P P PP P A + P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 873 PPXXXPPXPPXPXPPXPPRXGAPXPPXA 956
P PP P PP PP P PP A
Sbjct: 1694 PQSAAPPQMSAPTPPPPP-MSVPPPPSA 1720
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 421 PPXPXPXXXXPXPXPPXPXAPRXPP 495
PP P P P PP P P PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 873 PPXXXPPXPPXPXPPXPPRXGAPXPP 950
PP PP PP P P + P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAP 483
PPP P P P PP P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 409 GXXPPPXPXPXXXXPXPXPPXP 474
G PPP P P P PP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Frame = +3
Query: 870 PPPXXXPP--XPPXPXPPXPP 926
PPP PP PP PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 870 PPPXXXPPXPPXPXPPXPPRXG 935
PPP P P PP PP G
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPG 31
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -1
Query: 539 GGXXXAXGGGAXRGXGGXRGAXG-XGGXGXGXXXXGXGXGG 420
GG A GGG GG G G GG G G GG
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -2
Query: 955 AXGGXGAPXRGGXGGXG--XGGXGGXXXGGG 869
A GG RGG GG G GG GG G G
Sbjct: 35 ARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
P P P P P AP P P PP A P P
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVP 617
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
P P P P P P P P PP A P P
Sbjct: 635 PQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVP 677
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
P P P P P P P P PP A P P
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVP 647
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 418 PPPXPXPXXXXPXPXPPXPXAPRXPPXPRXAPPPXAXXXPPAP 546
P P P P P P P P P P P PP P
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPPLPDEP--VPEEPLPGEPPLP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,087,800
Number of Sequences: 5004
Number of extensions: 16824
Number of successful extensions: 422
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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