Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K22
         (956 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 948 PPPPXXXGGXXXXRXGGXPPPPPPXXXXXGGGG 850
           PPPP    G      G  PPPPPP       GG
Sbjct: 761 PPPPPPPPGVA----GAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 900 GXPPPPPPXXXXXGGGGXP 844
           G PPPPPP     G G  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 903 GGXPPPPPPXXXXXGGGGXP 844
           GG PPPPPP      G   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect(2) = 5.1
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -3

Query: 948 PPPPXXXGGXXXXRXGGXPPPPPP 877
           PPP               PPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPP 316



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 894 PPPPPPXXXXXG 859
           PPPPPP     G
Sbjct: 312 PPPPPPSRRNRG 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,650
Number of Sequences: 5004
Number of extensions: 27408
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)