Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K21
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   2.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    27   2.6  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 419 PARHTSHDSVTLI*CHN-GSHLATLRFR 499
           PA HT HDS TL   HN G+H+  LR R
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHI-ELRLR 183


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 427 SCRAGGIAHTADRAVDTVED*SWHGTGSELNLVEKTGSLVSHFA*KLTEANTGAEDRNLH 248
           SC+ GG A TA   +  +   S HG+   +  V   G+++ +    L + NTG + + L 
Sbjct: 194 SCQVGGCAATAAGGLRLLRYGSLHGSILGMEAVLPDGTILDNLV-TLRKDNTGLDIKQLF 252

Query: 247 I 245
           I
Sbjct: 253 I 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,196
Number of Sequences: 5004
Number of extensions: 52481
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)