Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K21
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       31   1.6  
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802...    29   3.6  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    29   3.6  
03_05_0145 + 21254448-21255488                                         28   8.4  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 353 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRFR 499
           A P     R+    RR  D PRPAR   H +VTL   H  S    +R R
Sbjct: 79  ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIRRR 127


>12_02_0451 -
           19179592-19179648,19179745-19179879,19180214-19180247,
           19180347-19180423,19180523-19180598,19180792-19180925,
           19181772-19181878,19182505-19182808,19182913-19183218
          Length = 409

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 410 APRPARHTSHDSVTLI*CHNGSHLATLRFRKKSRPMETAERRRVAPKKRMKTKI 571
           AP+P R T    VT I C N S   T   + + +   T   +++  KK+   K+
Sbjct: 71  APQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKV 124


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 165 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFNS 344
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+    +     ++
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHT 599

Query: 345 LP 350
           +P
Sbjct: 600 VP 601


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 502 KKSADGNSGAEEGGSKKKDENENQLXRTXS 591
           K+S +GN GA  GG+ K+D  E    R  S
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRRPDS 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,488,919
Number of Sequences: 37544
Number of extensions: 393151
Number of successful extensions: 957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)