Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K20
         (1158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    40   5e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.17 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.30 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
 Frame = +3

Query: 783  PTXHLPSXXRPPSELXXPSTXHNXPXXXSTSPSXHAXXXPXLXXSTTXDSPXAXSPPSQN 962
            P    PS  R P  L       N P      P   A   P L  ++   +P   +PPS  
Sbjct: 365  PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS-- 422

Query: 963  LPXXXXPT-PPXXPPRDRXXSPAXP 1034
            LP    P+ PP  PP     +PA P
Sbjct: 423  LPPSAPPSLPPSAPPSLPMGAPAAP 447


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
 Frame = +3

Query: 759  LSXSSXXSPTXHLPSXXRPPSELXXPSTXHNXPXXXSTSPSX------HAXXXPXLXXST 920
            +  SS  +     P+   P SEL  P++    P     SP+        A   P      
Sbjct: 115  IGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174

Query: 921  TXDSPXAXSPPSQ-NLPXXXXPTPPXXPPRDRXXSPAXPT 1037
               +    SPPS  +LP    P PP  PP     +P   T
Sbjct: 175  AQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANT 214


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 29/114 (25%), Positives = 38/114 (33%), Gaps = 1/114 (0%)
 Frame = +3

Query: 780  SPTXHLPSXXRPPSELXXPSTXHNXPXXXSTSPSXHAXXXPXLXXSTTXDSPXAXSPPSQ 959
            SP+    S     S    PS+    P   S SP+  +        S T  S  A SP   
Sbjct: 1555 SPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYS 1614

Query: 960  NLPXXXXPTPPXXPPRDRXXSPAXPTFXXRALHXS-TXFXYXPLPXAXHXSVPS 1118
                   PT P   P     SP  P++   +   S T   Y P   +   + PS
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/66 (27%), Positives = 22/66 (33%)
 Frame = +3

Query: 900  PXLXXSTTXDSPXAXSPPSQNLPXXXXPTPPXXPPRDRXXSPAXPTFXXRALHXSTXFXY 1079
            P +   T   +P    PP+   P    P PP  PP      P  P     A+       Y
Sbjct: 737  PAVIVPTPAPAPIPVPPPA---PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793

Query: 1080 XPLPXA 1097
             P P A
Sbjct: 794  APAPQA 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,475
Number of Sequences: 5004
Number of extensions: 11534
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)