Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K20
         (1158 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    33   0.51 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    33   0.51 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   4.7  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 31/117 (26%), Positives = 38/117 (32%)
 Frame = +3

Query: 768  SSXXSPTXHLPSXXRPPSELXXPSTXHNXPXXXSTSPSXHAXXXPXLXXSTTXDSPXAXS 947
            S   SPT    S   P      PS     P    TSPS ++   P    S+   SP   S
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPSSPSYSPSSPSYSPS--S 1672

Query: 948  PPSQNLPXXXXPTPPXXPPRDRXXSPAXPTFXXRALHXSTXFXYXPLPXAXHXSVPS 1118
            P          PT P   P     SP  PT+   +    +   Y P       S P+
Sbjct: 1673 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPT 1729


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 31/117 (26%), Positives = 38/117 (32%)
 Frame = +3

Query: 768  SSXXSPTXHLPSXXRPPSELXXPSTXHNXPXXXSTSPSXHAXXXPXLXXSTTXDSPXAXS 947
            S   SPT    S   P      PS     P    TSPS ++   P    S+   SP   S
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPSSPSYSPSSPSYSPS--S 1679

Query: 948  PPSQNLPXXXXPTPPXXPPRDRXXSPAXPTFXXRALHXSTXFXYXPLPXAXHXSVPS 1118
            P          PT P   P     SP  PT+   +    +   Y P       S P+
Sbjct: 1680 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPT 1736


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 31/123 (25%), Positives = 33/123 (26%)
 Frame = -1

Query: 999 GXXXEWXXXGXGGFERGGXXXGGSLWWWXXXGXXXXXRXXRXXLXXXWXGCGGWRGXXAX 820
           G    W   G GG+ RGG   GG   W    G                 G G W G    
Sbjct: 44  GGPGGWGNNGGGGWGRGGGRGGGD--WGGNNGGGGNW-------GGNGGGRGDWGGNGGG 94

Query: 819 XEGXXXMGDVXWGXDXXXGRXEXXXXXTXAGXDR*XXGISRGXEWGXGRSXXXAXXXXSX 640
             G    GD  WG +   G           G      G   G   G GR         S 
Sbjct: 95  GRGGGGRGD--WGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSN 152

Query: 639 XGG 631
            GG
Sbjct: 153 GGG 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,377
Number of Sequences: 27780
Number of extensions: 92587
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3151206316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)