Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K19
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...   108   1e-24
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    31   0.21 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.0  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score =  108 bits (259), Expect = 1e-24
 Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
 Frame = +3

Query: 174 RFSSYFVIFCSVIIFAQSDVPRP---RGVSLSKASLYLPTK--DFTCFDGTATIPFSYVN 338
           +FS ++ +   ++I +   V      RGV+  K+ LY P    ++ C      I F+ VN
Sbjct: 2   KFSQWYTLTAPLLISSLYTVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVN 61

Query: 339 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTXEYANPTAC 518
           DDYCDC DGSDEPGTSAC NG F C N G+    +PS+ V+D VCDCCDG+ E  +   C
Sbjct: 62  DDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKC 119

Query: 519 TNICEE 536
            N C +
Sbjct: 120 PNTCAQ 125


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = +3

Query: 327 SYVNDDYCDCFDGSD-EPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTXEYA 503
           SY     C    GS  +PG+    +  F C   G R   +P S      CD C GT    
Sbjct: 233 SYSVSSTCSSCHGSGLQPGSHK--STCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTI 290

Query: 504 NPTACTNIC 530
            P +    C
Sbjct: 291 PPNSACRSC 299


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 181  ENRSIHVLQTMVIV*LTINEIP 116
            ENRS+ +LQT ++V +T++ IP
Sbjct: 1355 ENRSLTLLQTTLLVLVTVHLIP 1376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,396
Number of Sequences: 5004
Number of extensions: 39436
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)